AMTR_s00016p00254860 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.329

Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana


Gene families : OG0000125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00254860
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00075010 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00016p00254630 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00023p00150860 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00023p00152840 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00023p00171820 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00023p00172000 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT2G28580 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT2G44930 No alias Plant protein of unknown function (DUF247) 0.04 OrthoFinder output from all 47 species
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.05 OrthoFinder output from all 47 species
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.05 OrthoFinder output from all 47 species
AT3G50160 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT5G11290 No alias Plant protein of unknown function (DUF247) 0.05 OrthoFinder output from all 47 species
Aev_g02345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09322 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09662 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33018 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g50177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06594 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21032 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g31495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08490.t1 Aspi01Gene08490 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene22023.t1 Aspi01Gene22023 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36178.t1 Aspi01Gene36178 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61845.t1 Aspi01Gene61845 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62946.t1 Aspi01Gene62946 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70522.t1 Aspi01Gene70522 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70527.t1 Aspi01Gene70527 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g01902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.06G018900.1 Ceric.06G018900 not classified & original description: pacid=50620412... 0.03 OrthoFinder output from all 47 species
Ceric.08G043000.1 Ceric.08G043000 not classified & original description: pacid=50637921... 0.03 OrthoFinder output from all 47 species
Ceric.08G043100.1 Ceric.08G043100 not classified & original description: pacid=50638846... 0.03 OrthoFinder output from all 47 species
Ceric.30G007100.1 Ceric.30G007100 not classified & original description: pacid=50608898... 0.04 OrthoFinder output from all 47 species
Dcu_g09385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g14683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26830 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46391 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001131001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
GSVIVT01017510001 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01033580001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
GSVIVT01035823001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_08678 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_11125 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_12420 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_23451 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_34674 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Gb_37280 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_37283 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_37285 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_37287 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_41229 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os01g21650.1 LOC_Os01g21650 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os01g21670.1 LOC_Os01g21670 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g42650.1 LOC_Os04g42650 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os05g15230.1 LOC_Os05g15230 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os11g34090.1 LOC_Os11g34090 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os12g29620.1 LOC_Os12g29620 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os12g29650.1 LOC_Os12g29650 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Len_g00358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g35601 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_92471g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp3g02930.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g16570.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g27647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07146 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08932 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g26666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17300 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g66698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09735 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g20007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26636 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16843 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63876 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g63877 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc05g006690.3.1 Solyc05g006690 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc07g007010.1.1 Solyc07g007010 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc09g009230.2.1 Solyc09g009230 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Solyc10g079520.1.1 Solyc10g079520 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Solyc10g079530.2.1 Solyc10g079530 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Solyc12g099300.1.1 Solyc12g099300 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g06895 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30858 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
InterPro domains Description Start Stop
IPR004158 DUF247_pln 35 302
No external refs found!