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  5. AMTR_s00016p00254630

AMTR_s00016p00254630 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.326

Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana


Gene families : OG0000125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00254630
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00068760 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00013p00075010 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00016p00254860 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00023p00151010 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00152840 evm_27.TU.AmTr_v1... No description available 0.1 OrthoFinder output from all 47 species
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AMTR_s00023p00168910 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00033p00169500 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00033p00171210 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT1G65985 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT1G67150 No alias Plant protein of unknown function (DUF247) 0.05 OrthoFinder output from all 47 species
AT2G36430 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G44695 No alias No description available 0.02 OrthoFinder output from all 47 species
AT3G44710 No alias Plant protein of unknown function (DUF247) 0.06 OrthoFinder output from all 47 species
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.04 OrthoFinder output from all 47 species
AT3G47250 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G50130 No alias Plant protein of unknown function (DUF247) 0.04 OrthoFinder output from all 47 species
AT3G50150 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G50160 No alias Plant protein of unknown function (DUF247) 0.05 OrthoFinder output from all 47 species
AT5G11290 No alias Plant protein of unknown function (DUF247) 0.04 OrthoFinder output from all 47 species
AT5G22540 No alias Plant protein of unknown function (DUF247) 0.02 OrthoFinder output from all 47 species
AT5G22550 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
Aev_g02345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13693 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g19466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33018 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g21179 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28532 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g30226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01288 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g30297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08488.t1 Aspi01Gene08488 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08489.t1 Aspi01Gene08489 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49158.t1 Aspi01Gene49158 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene53577.t1 Aspi01Gene53577 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene55382.t1 Aspi01Gene55382 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56022.t1 Aspi01Gene56022 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61822.t1 Aspi01Gene61822 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61845.t1 Aspi01Gene61845 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70522.t1 Aspi01Gene70522 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70527.t1 Aspi01Gene70527 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene72945.t1 Aspi01Gene72945 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01047 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45295 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G043000.1 Ceric.08G043000 not classified & original description: pacid=50637921... 0.02 OrthoFinder output from all 47 species
Ceric.08G043100.1 Ceric.08G043100 not classified & original description: pacid=50638846... 0.04 OrthoFinder output from all 47 species
Ceric.11G038500.1 Ceric.11G038500 not classified & original description: pacid=50595115... 0.03 OrthoFinder output from all 47 species
Dac_g36449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g13323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19655 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26830 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g27578 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46391 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g52253 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01014793001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01017510001 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01017512001 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01022062001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01027389001 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01033984001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_03494 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Gb_08678 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_11125 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_20047 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_20052 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_23451 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_28782 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_36108 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_36109 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_37280 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_37287 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_37289 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os01g21650.1 LOC_Os01g21650 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os01g38120.1 LOC_Os01g38120 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os02g15500.1 LOC_Os02g15500 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os03g39520.1 LOC_Os03g39520 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os05g15230.1 LOC_Os05g15230 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os06g08120.1 LOC_Os06g08120 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os08g07050.1 LOC_Os08g07050 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os08g42570.1 LOC_Os08g42570 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os11g33394.1 LOC_Os11g33394 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os11g33942.1 LOC_Os11g33942 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os11g34090.1 LOC_Os11g34090 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g29620.1 LOC_Os12g29620 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g29650.1 LOC_Os12g29650 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g35601 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g42582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g38049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10435738g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_180326g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_26069g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_314857g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_413488g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_6919317g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_6958038g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_749769g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_92471g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp2g23330.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp3g02930.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g14823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g27647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g38082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07146 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19917 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29315 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g34400 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g50677 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g66075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g66141 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09735 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63876 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g63877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g093020.3.1 Solyc02g093020 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc04g008920.1.1 Solyc04g008920 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc06g068340.3.1 Solyc06g068340 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc09g009230.2.1 Solyc09g009230 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc10g079520.1.1 Solyc10g079520 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc10g079530.2.1 Solyc10g079530 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g00455 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26898 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g27969 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e023471_P002 Zm00001e023471 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e024232_P001 Zm00001e024232 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e036342_P001 Zm00001e036342 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005199 structural constituent of cell wall IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR004158 DUF247_pln 38 419
No external refs found!