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  5. AMTR_s00016p00253230

AMTR_s00016p00253230 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.312

No description available


Gene families : OG0000329 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000329_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00253230

Target Alias Description ECC score Gene Family Method Actions
AT1G67910 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.04 OrthoFinder output from all 47 species
Adi_g044951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g08787 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g36134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g48875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20808.t1 Aspi01Gene20808 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54862.t1 Aspi01Gene54862 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G073300.1 Ceric.06G073300 not classified & original description: pacid=50619460... 0.02 OrthoFinder output from all 47 species
Ceric.25G031700.1 Ceric.25G031700 not classified & original description: pacid=50594457... 0.02 OrthoFinder output from all 47 species
Dcu_g40045 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12479 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_02204 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_17168 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_37466 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_37761 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g55600.1 LOC_Os02g55600 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g20600.1 LOC_Os03g20600 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g10535 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g22683 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_103063g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_18091g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_9485570g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g08349 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06277 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08882 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09608 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015803 No alias not classified & original description: CDS=1-222 0.04 OrthoFinder output from all 47 species
Solyc05g013560.3.1 Solyc05g013560 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc07g007330.1.1 Solyc07g007330 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g18214 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005788 endoplasmic reticulum lumen IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!