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  5. AMTR_s00016p00244350

AMTR_s00016p00244350 (SNM1, ATSNM1,...)


Aliases : SNM1, ATSNM1, evm_27.TU.AmTr_v1.0_scaffold00016.271

Description : DNA damage response.DNA repair mechanisms.interstrand crosslink repair.SNM repair factor


Gene families : OG0001699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001699_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00244350

Target Alias Description ECC score Gene Family Method Actions
Ala_g02014 SNM1, ATSNM1 interstrand crosslink repair factor *(SNM) & original... 0.06 OrthoFinder output from all 47 species
Azfi_s0112.g045765 SNM1, ATSNM1 not classified & original description: CDS=1-1590 0.03 OrthoFinder output from all 47 species
Mp1g24430.1 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Smo96540 AtLIG6, LIG6 DNA ligase 6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR011084 DRMBL 358 461
No external refs found!