AMTR_s00016p00236900 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.240

No description available


Gene families : OG0006276 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006276_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00236900
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Ehy_g06820 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_37873 AtTOP3alpha, TOP3A DNA topoisomerase 3-alpha OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020261 No alias not classified & original description: CDS=1-1290 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
InterPro domains Description Start Stop
IPR010666 Znf_GRF 91 119
IPR001878 Znf_CCHC 26 42
No external refs found!