AMTR_s00016p00230450 (RAT5, HTA1, ATHTA1,...)

Aliases : RAT5, HTA1, ATHTA1, evm_27.TU.AmTr_v1.0_scaffold00016.224

Description : Chromatin organisation.histones.H2A-type histone

Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00016p00230450
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
Adi_g034181	GAMMA-H2AX,...	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene10197.t1	RAT5, HTA1,...	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g07967	GAMMA-H2AX,...	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	20	91

External Links

No external refs found!