AMTR_s00016p00207780 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.177

Description : RNA biosynthesis.transcriptional activation.GRAS transcription factor

Gene families : OG0001108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001108_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00016p00207780

Target	Alias	Description	ECC score	Gene Family Method
Ala_g27684	RGL1, RGL	GRAS-type transcription factor *(RAD1) & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene45973.t1	RGL1, RGL,...	GRAS-type transcription factor *(RAD1) & original...	0.04	OrthoFinder output from all 47 species
Cba_g20248	RGA, RGA1	transcription factor *(DELLA) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g09377	RGA2, GAI	transcription factor *(DELLA) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g32765	RGA, RGA1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g02479	RGL1, RGL	GRAS-type transcription factor *(RAD1) & original...	0.02	OrthoFinder output from all 47 species
Spa_g01866	RGA2, GAI	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005202	TF_GRAS	2	220

External Links

No external refs found!