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  5. AMTR_s00016p00170610

AMTR_s00016p00170610 (ATICE1, ICE1, SCRM,...)


Aliases : ATICE1, ICE1, SCRM, evm_27.TU.AmTr_v1.0_scaffold00016.130

Description : External stimuli response.temperature.ICE-CBF cold acclimation transcriptional cascade.ICE1/2 transcription factor


Gene families : OG0001330 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001330_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00170610

Target Alias Description ECC score Gene Family Method Actions
AT1G12860 SCRM2, ICE2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g04435 SCRM2, ICE2 transcription factor *(ICE1/2) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g27013 SCRM2, ICE2 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g17032 SCRM2, ICE2 transcription factor *(ICE1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05040 SCRM2, ICE2 transcription factor *(ICE1/2) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene00507.t2 SCRM2, ICE2,... transcription factor *(ICE1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene03868.t2 SCRM2, ICE2,... transcription factor *(ICE1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010652 SCRM2, ICE2 bHLH-type transcription factor & original description: CDS=1-1947 0.05 OrthoFinder output from all 47 species
Azfi_s0560.g076949 SCRM2, ICE2 transcription factor *(ICE1/2) & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g14843 SCRM2, ICE2 transcription factor *(ICE1/2) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g26604 ATICE1, ICE1, SCRM bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75218 SCRM2, ICE2 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.23G086600.1 SCRM2, ICE2,... bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g15073 SCRM2, ICE2 transcription factor *(ICE1/2) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01004405001 bHLH093 RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01008637001 ATICE1, ICE1, SCRM External stimuli response.temperature.ICE-CBF cold... 0.05 OrthoFinder output from all 47 species
Gb_30129 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g04310.1 bHLH093, LOC_Os03g04310 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os06g50900.1 bHLH093, LOC_Os06g50900 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Len_g04800 SCRM2, ICE2 transcription factor *(ICE1/2) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10435231g0010 SCRM2, ICE2 transcription factor (bHLH). transcription factor (ICE1|2) 0.02 OrthoFinder output from all 47 species
MA_12807g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_448849g0010 ATICE1, ICE1, SCRM transcription factor (bHLH). transcription factor (ICE1|2) 0.07 OrthoFinder output from all 47 species
Msp_g13280 ATICE1, ICE1, SCRM transcription factor *(ICE1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g33626 bHLH093 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08866 ATICE1, ICE1, SCRM transcription factor *(ICE1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001696 SCRM2, ICE2 bHLH-type transcription factor & original description: CDS=1-2049 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002409 SCRM2, ICE2 bHLH-type transcription factor & original description: CDS=1-732 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0228.g026391 SCRM2, ICE2 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Solyc02g091690.3.1 bHLH093, Solyc02g091690 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc03g118310.4.1 ATICE1, ICE1,... transcription factor (bHLH). transcription factor (ICE1|2) 0.04 OrthoFinder output from all 47 species
Spa_g04208 SCRM2, ICE2 transcription factor *(ICE1/2) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g06696 SCRM2, ICE2 transcription factor *(ICE1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53770 ATICE1, ICE1, SCRM transcription factor *(ICE1/2) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g08227 SCRM2, ICE2 transcription factor *(ICE1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44648 SCRM2, ICE2 transcription factor *(ICE1/2) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e021526_P001 ATICE1, ICE1,... transcription factor (bHLH). transcription factor (ICE1|2) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 359 401
No external refs found!