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  5. AMTR_s00016p00088520

AMTR_s00016p00088520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.50

Description : Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PAM68 protein


Gene families : OG0005725 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005725_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00016p00088520

Target Alias Description ECC score Gene Family Method Actions
Adi_g112212 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.08 OrthoFinder output from all 47 species
Aev_g21605 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.02 OrthoFinder output from all 47 species
Als_g24035 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.02 OrthoFinder output from all 47 species
Aob_g16015 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene55602.t1 PAM68, Aspi01Gene55602 protein involved in PS-II assembly *(PAM68) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g28925 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.09 OrthoFinder output from all 47 species
Ehy_g17711 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01018633001 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder output from all 47 species
GSVIVT01028843001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
LOC_Os10g38910.1 LOC_Os10g38910 PAM68 protein involved in PS-II assembly 0.02 OrthoFinder output from all 47 species
MA_268175g0010 PAM68 PAM68 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Msp_g02243 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.03 OrthoFinder output from all 47 species
Ore_g07606 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.03 OrthoFinder output from all 47 species
Ore_g07607 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.02 OrthoFinder output from all 47 species
Pir_g19463 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g00344 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009124 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.08 OrthoFinder output from all 47 species
Solyc03g007860.1.1 Solyc03g007860 PAM68 protein involved in PS-II assembly 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR021855 PAM68-like 47 170
No external refs found!