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  5. AMTR_s00016p00054020

AMTR_s00016p00054020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.20

No description available


Gene families : OG0000248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000248_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00054020
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT1G23340 No alias Protein of Unknown Function (DUF239) 0.03 OrthoFinder output from all 47 species
AT4G23350 No alias Protein of Unknown Function (DUF239) 0.02 OrthoFinder output from all 47 species
AT4G23360 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.02 OrthoFinder output from all 47 species
Aspi01Gene02720.t1 Aspi01Gene02720 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32103.t1 Aspi01Gene32103 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g73343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g02752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026331001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01026924001 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os01g74160.1 LOC_Os01g74160 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g55210.1 LOC_Os02g55210 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os07g24050.1 LOC_Os07g24050 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os11g18140.1 LOC_Os11g18140 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g09566 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40820 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo90379 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc03g112620.4.1 Solyc03g112620 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g38349 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e020987_P001 Zm00001e020987 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e025875_P001 Zm00001e025875 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA

No InterPro domains available for this sequence

No external refs found!