1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00015p00253000

AMTR_s00015p00253000 (ATSIG5, SIG5, SIGE,...)


Aliases : ATSIG5, SIG5, SIGE, evm_27.TU.AmTr_v1.0_scaffold00015.107

Description : RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis thaliana


Gene families : OG0006267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006267_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00015p00253000
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT5G24120 ATSIG5, SIG5, SIGE sigma factor E 0.04 OrthoFinder output from all 47 species
Ala_g08597 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Als_g20817 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aob_g18205 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Aop_g08605 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene21613.t1 ATSIG5, SIG5,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g23756 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.02G065100.1 ATSIG5, SIG5,... basal Sigma-type transcription factor & original... 0.07 OrthoFinder output from all 47 species
Dac_g17058 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01028717001 ATSIG5, SIG5, SIGE RNA biosynthesis.organelle... 0.04 OrthoFinder output from all 47 species
Gb_40730 ATSIG5, SIG5, SIGE basal transcription factor (Sigma) 0.07 OrthoFinder output from all 47 species
LOC_Os05g50930.1 ATSIG5, SIG5,... basal transcription factor (Sigma) 0.06 OrthoFinder output from all 47 species
Len_g00665 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Lfl_g17419 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
MA_10428665g0010 ATSIG5, SIG5, SIGE RNA polymerase sigma factor sigE,... 0.05 OrthoFinder output from all 47 species
Msp_g47380 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g25379 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pir_g19480 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ppi_g42839 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014355 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0317.g027226 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g19097 No alias basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Smo147096 ATSIG5, SIG5, SIGE RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
Solyc03g007370.3.1 ATSIG5, SIG5,... basal transcription factor (Sigma) 0.03 OrthoFinder output from all 47 species
Spa_g15536 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Spa_g22251 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Tin_g20273 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e032596_P002 ATSIG5, SIG5,... basal transcription factor (Sigma) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003913 DNA photolyase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
MF GO:0019203 carbohydrate phosphatase activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0050308 sugar-phosphatase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA

No InterPro domains available for this sequence

No external refs found!