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  5. AMTR_s00015p00239460

AMTR_s00015p00239460 (SPCH,...)


Aliases : SPCH, evm_27.TU.AmTr_v1.0_scaffold00015.95

Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000768 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000768_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00015p00239460
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00198780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
AT3G61950 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G65320 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g013122 FMA bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g25773 FMA bHLH-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Als_g03090 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07138 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10378 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04490 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09821 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18861.t1 FMA, Aspi01Gene18861 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29143.t1 FMA, Aspi01Gene29143 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38670.t1 FMA, Aspi01Gene38670 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene50659.t1 FMA, Aspi01Gene50659 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53774.t1 SPCH, Aspi01Gene53774 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60129.t1 FMA, Aspi01Gene60129 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g010552 FMA bHLH-type transcription factor & original description: CDS=1-1698 0.04 OrthoFinder output from all 47 species
Cba_g00995 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06394 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G023000.1 FMA, Ceric.17G023000 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.18G037700.1 Ceric.18G037700 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G040300.1 Ceric.21G040300 bHLH-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.23G002400.1 FMA, Ceric.23G002400 bHLH-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.26G015300.1 Ceric.26G015300 bHLH-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Dcu_g02905 FMA bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g04681 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17824 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g42964 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04294 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21962 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000012001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01003437001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01009097001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01021074001 FMA RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01027446001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
Gb_01096 FMA transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Gb_17233 FMA transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Gb_21105 FMA transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Gb_26519 FMA transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Gb_34544 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g15760.1 SPCH, LOC_Os02g15760 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os02g46560.1 LOC_Os02g46560 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
LOC_Os04g50090.1 LOC_Os04g50090 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
LOC_Os05g51820.1 MUTE, LOC_Os05g51820 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Len_g03257 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g41769 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35034 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g37122 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_120602g0010 SPCH transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_141469g0010 FMA transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_194157g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_57244g0010 FMA transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
MA_686524g0010 FMA transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Msp_g31314 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43111 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10985 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10890 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g38431 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g66099 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63342 FMA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g63346 No alias bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000446 No alias bHLH-type transcription factor & original description: CDS=1-1233 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012172 FMA bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g07999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28288 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g080050.4.1 MUTE, Solyc01g080050 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc03g007410.4.1 SPCH, Solyc03g007410 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc04g074810.4.1 Solyc04g074810 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc09g091760.3.1 FMA, Solyc09g091760 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc11g010340.2.1 Solyc11g010340 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Spa_g17260 FMA bHLH-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g47856 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000161_P002 Zm00001e000161 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e003394_P001 Zm00001e003394 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e009989_P001 Zm00001e009989 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e023271_P001 Zm00001e023271 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e023838_P003 Zm00001e023838 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e024824_P001 SPCH, Zm00001e024824 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e026696_P001 MUTE, Zm00001e026696 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e037075_P001 SPCH, Zm00001e037075 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e039050_P001 Zm00001e039050 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e041403_P001 Zm00001e041403 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 102 153
No external refs found!