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  5. AMTR_s00015p00090420

AMTR_s00015p00090420 (FLD,...)


Aliases : FLD, evm_27.TU.AmTr_v1.0_scaffold00015.20

Description : Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL/KDM1 lysine-specific demethylase


Gene families : OG0003252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00015p00090420

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001497.8 SWP1, ATLSD1,... Lysine-specific histone demethylase 1 homolog 2 OS=Oryza... 0.01 OrthoFinder output from all 47 species
Len_g09087 FLD flowering time factor *(FLD) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015890_P001 SWP1, ATLSD1,... lysine-specific demethylase (LDL/KDM1) 0.02 OrthoFinder output from all 47 species
Zm00001e040280_P001 LDL2, Zm00001e040280 lysine-specific demethylase (LDL/KDM1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007526 SWIRM 114 195
IPR002937 Amino_oxidase 221 392
IPR002937 Amino_oxidase 398 590
No external refs found!