AMTR_s00013p00262120 (SHM4,...)

Aliases : SHM4, evm_27.TU.AmTr_v1.0_scaffold00013.279

Description : Amino acid metabolism.biosynthesis.serine family.glycine.serine hydroxymethyltransferase

Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00013p00262120

Target	Alias	Description	ECC score	Gene Family Method
AT4G13930	SHM4	serine hydroxymethyltransferase 4	0.09	OrthoFinder output from all 47 species
AT5G26780	SHM2	serine hydroxymethyltransferase 2	0.04	OrthoFinder output from all 47 species
Aev_g10440	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Ala_g06666	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Als_g03821	SHM7	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Als_g30419	SHM2	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Als_g52949	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Aop_g08717	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene50439.t1	SHM7, Aspi01Gene50439	EC_2.1 transferase transferring one-carbon group &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene54986.t1	SHM4, Aspi01Gene54986	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene56437.t1	STM, SHM1,...	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Cba_g07101	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.04	OrthoFinder output from all 47 species
Ceric.16G071800.1	SHM4, Ceric.16G071800	EC_2.1 transferase transferring one-carbon group &...	0.05	OrthoFinder output from all 47 species
Ceric.37G043000.1	STM, SHM1,...	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Cre06.g293950	SHM4	Amino acid metabolism.biosynthesis.serine...	0.07	OrthoFinder output from all 47 species
Dac_g28484	STM, SHM1, SHMT1	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Dcu_g23927	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.06	OrthoFinder output from all 47 species
GSVIVT01009226001	STM, SHM1, SHMT1	Photosynthesis.photorespiration.serine hydroxymethyltransferase	0.1	OrthoFinder output from all 47 species
LOC_Os11g26860.1	SHM4, LOC_Os11g26860	Serine hydroxymethyltransferase 4 OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species
Len_g12401	STM, SHM1, SHMT1	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Len_g24771	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.05	OrthoFinder output from all 47 species
Lfl_g01520	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.04	OrthoFinder output from all 47 species
MA_11357g0010	SHM4	serine hydroxymethyltransferase. serine hydroxymethyltransferase	0.07	OrthoFinder output from all 47 species
Msp_g48544	STM, SHM1, SHMT1	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Nbi_g04285	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.05	OrthoFinder output from all 47 species
Ore_g20456	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Pir_g01613	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Pp3c15_6270V3.1	SHM4, Pp3c15_6270	serine hydroxymethyltransferase 4	0.02	OrthoFinder output from all 47 species
Sam_g07760	No alias	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Smo166496	SHM4	Amino acid metabolism.biosynthesis.serine...	0.09	OrthoFinder output from all 47 species
Smo270566	STM, SHM1, SHMT1	Photosynthesis.photorespiration.serine hydroxymethyltransferase	0.03	OrthoFinder output from all 47 species
Solyc05g053810.3.1	SHM4, Solyc05g053810	serine hydroxymethyltransferase. serine hydroxymethyltransferase	0.05	OrthoFinder output from all 47 species
Spa_g04332	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.06	OrthoFinder output from all 47 species
Spa_g30099	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.06	OrthoFinder output from all 47 species
Tin_g10060	STM, SHM1, SHMT1	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Tin_g12386	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.05	OrthoFinder output from all 47 species
Zm00001e021483_P001	SHM4, Zm00001e021483	serine hydroxymethyltransferase. serine hydroxymethyltransferase	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004372	glycine hydroxymethyltransferase activity	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006544	glycine metabolic process	IEA	Interproscan
BP	GO:0006563	L-serine metabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	HCCA
MF	GO:0003871	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	IEP	HCCA
MF	GO:0004013	adenosylhomocysteinase activity	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006730	one-carbon metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
MF	GO:0008172	S-methyltransferase activity	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0042085	5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0046508	hydrolase activity, acting on carbon-sulfur bonds	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001085	Ser_HO-MeTrfase	12	412

External Links

No external refs found!

AMTR_s00013p00262120 (SHM4,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation