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  5. AMTR_s00013p00260550

AMTR_s00013p00260550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.270

Description : UV-B-induced protein At3g17800, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000927 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000927_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00260550

Target Alias Description ECC score Gene Family Method Actions
Adi_g010050 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38111 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29002.t1 Aspi01Gene29002 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g14840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03848 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20230 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g50860.1 LOC_Os04g50860 UV-B-induced protein At3g17800, chloroplastic... 0.04 OrthoFinder output from all 47 species
Lfl_g22589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g26345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_40443g0010 No alias UV-B-induced protein At3g17800, chloroplastic... 0.02 OrthoFinder output from all 47 species
MA_47866g0010 No alias UV-B-induced protein At3g17800, chloroplastic... 0.02 OrthoFinder output from all 47 species
Mp1g22750.1 No alias UV-B-induced protein At3g17800, chloroplastic... 0.03 OrthoFinder output from all 47 species
Msp_g08344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0048037 obsolete cofactor binding IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR008479 DUF760 148 277
No external refs found!