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  5. AMTR_s00013p00255370

AMTR_s00013p00255370 (AFP3,...)


Aliases : AFP3, evm_27.TU.AmTr_v1.0_scaffold00013.244

Description : RNA biosynthesis.transcriptional repression.AFP/NINJA transcriptional co-repressor


Gene families : OG0001010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00255370

Target Alias Description ECC score Gene Family Method Actions
AT1G69260 AFP1 ABI five binding protein 0.06 OrthoFinder output from all 47 species
AT3G02140 AFP4, TMAC2 AFP2 (ABI five-binding protein 2) family protein 0.03 OrthoFinder output from all 47 species
AT3G29575 AFP3 ABI five binding protein 3 0.05 OrthoFinder output from all 47 species
Aev_g07969 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g35216 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.06 OrthoFinder output from all 47 species
Als_g33640 NINJA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17001 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g01909 AFP3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g01983 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08137 AFP4, TMAC2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003927001 No alias RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.03 OrthoFinder output from all 47 species
LOC_Os01g68820.1 LOC_Os01g68820 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os07g41160.1 AFP3, LOC_Os07g41160 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
Len_g15953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g20542 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g37601 AFP3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18459 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.04 OrthoFinder output from all 47 species
Pnu_g19056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g32749 NINJA not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc02g030633.1.1 AFP3, Solyc02g030633 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
Solyc04g005380.3.1 AFP2, Solyc04g005380 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004806 triglyceride lipase activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR012463 Ninja_motif 397 508
No external refs found!