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  5. AMTR_s00013p00244720

AMTR_s00013p00244720 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.205

Description : RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum


Gene families : OG0000880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00244720

Target Alias Description ECC score Gene Family Method Actions
AT4G16830 No alias Hyaluronan / mRNA binding family 0.02 OrthoFinder output from all 47 species
Adi_g025028 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Adi_g054126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene42293.t1 Aspi01Gene42293 regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Ceric.30G035000.1 Ceric.30G035000 regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000404.31 No alias No description available 0.02 OrthoFinder output from all 47 species
Dde_g01517 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
MA_10428060g0020 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.05 OrthoFinder output from all 47 species
MA_141447g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp4g03030.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g04410.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g30654 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Pir_g04627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46771 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Spa_g31252 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Spa_g50119 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e019955_P001 Zm00001e019955 RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 OrthoFinder output from all 47 species
Zm00001e019958_P002 Zm00001e019958 RGG repeats nuclear RNA binding protein A (Fragment)... 0.04 OrthoFinder output from all 47 species
Zm00001e026661_P002 Zm00001e026661 RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!