AMTR_s00013p00209880 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.145

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL18 component

Gene families : OG0005910 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005910_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00013p00209880

Target	Alias	Description	ECC score	Gene Family Method
AT1G48350	No alias	Ribosomal L18p/L5e family protein	0.06	OrthoFinder output from all 47 species
Adi_g001890	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aev_g28610	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Als_g00187	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aop_g20657	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Cba_g10879	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.13G022200.1	Ceric.13G022200	component *(uL18c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Cre01.g052100	No alias	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Dcu_g31625	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ehy_g02012	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01017720001	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Gb_12756	No alias	component psRPL18 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
LOC_Os03g61260.1	LOC_Os03g61260	component psRPL18 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Len_g30980	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Lfl_g00332	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
MA_7609850g0010	No alias	50S ribosomal protein L18, chloroplastic OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Mp6g08500.1	No alias	component psRPL18 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Msp_g22178	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g15098	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ore_g07265	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ppi_g02809	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017759	No alias	EC_3.2 glycosylase & original description: CDS=437-952	0.05	OrthoFinder output from all 47 species
Sam_g19670	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g45370	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Smo143891	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Solyc12g098890.2.1	Solyc12g098890	component psRPL18 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Spa_g00581	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Zm00001e006246_P001	Zm00001e006246	component psRPL18 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006721	terpenoid metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
BP	GO:0016114	terpenoid biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016744	transketolase or transaldolase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005484	Ribosomal_L18	47	164

External Links

No external refs found!

AMTR_s00013p00209880 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation