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  5. AMTR_s00012p00256130

AMTR_s00012p00256130 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.295

Description : Protein JINGUBANG OS=Arabidopsis thaliana


Gene families : OG0000309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00256130
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00162370 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT1G24130 No alias Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G18950 No alias Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G51930 No alias Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
Als_g13400 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g47008 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05746.t1 Aspi01Gene05746 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44877.t1 Aspi01Gene44877 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene45302.t1 Aspi01Gene45302 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45306.t1 Aspi01Gene45306 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene60159.t1 Aspi01Gene60159 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g010472 No alias not classified & original description: CDS=1-1746 0.03 OrthoFinder output from all 47 species
Cba_g09340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G085200.1 Ceric.12G085200 not classified & original description: pacid=50602067... 0.02 OrthoFinder output from all 47 species
Ceric.13G036200.1 Ceric.13G036200 not classified & original description: pacid=50636901... 0.02 OrthoFinder output from all 47 species
Ceric.28G012700.1 Ceric.28G012700 not classified & original description: pacid=50571070... 0.02 OrthoFinder output from all 47 species
Dac_g03734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25993 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000858001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01007825001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_26403 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os01g13140.1 LOC_Os01g13140 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os01g71780.1 LOC_Os01g71780 Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os04g40560.1 LOC_Os04g40560 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g28913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14258 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g32500 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08501 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56732 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g60508 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0113.g020851 No alias not classified & original description: CDS=1-1557 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0223.g026269 No alias not classified & original description: CDS=1-1944 0.02 OrthoFinder output from all 47 species
Smo66275 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g068250.2.1 Solyc01g068250 Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc01g109120.3.1 Solyc01g109120 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc02g090150.1.1 Solyc02g090150 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc07g025140.4.1 Solyc07g025140 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g20735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17869 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e005608_P001 Zm00001e005608 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e007790_P001 Zm00001e007790 Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e018669_P001 Zm00001e018669 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e026116_P001 Zm00001e026116 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR021717 Nucleoporin_Nup160 92 145
IPR001680 WD40_repeat 207 242
IPR001680 WD40_repeat 343 383
IPR001680 WD40_repeat 173 202
IPR001680 WD40_repeat 305 336
No external refs found!