1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os09g28210.1

LOC_Os09g28210.1


Description : transcription factor (bHLH)


Gene families : OG_01_0000092 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000092_tree ,
OG_02_0000040 (LandPlants) Phylogenetic Tree(s): OG_02_0000040_tree ,
OG_03_0000031 (SeedPlants) Phylogenetic Tree(s): OG_03_0000031_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g28210.1
Cluster HCCA: Cluster_337

Target Alias Description ECC score Gene Family Method Actions
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.03 Archaeplastida
AT1G27740 RSL4 root hair defective 6-like 4 0.04 Archaeplastida
AT2G14760 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT4G00120 GT140, IND1, IND, EDA33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT4G33880 RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 Archaeplastida
AT4G36930 SPT basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.01 Archaeplastida
AT5G09750 HEC3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.06 Archaeplastida
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.02 Archaeplastida
GSVIVT01031338001 No alias External stimuli response.light.red/far red light.PIF... 0.03 Archaeplastida
Gb_30387 No alias transcription factor (bHLH) 0.04 Archaeplastida
Gb_30839 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os05g04740.2 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os07g39940.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os12g39850.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_306658g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_83500g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Pp3c16_21590V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 Archaeplastida
Pp3c1_40040V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c25_13740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c27_8050V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 Archaeplastida
Pp3c4_24380V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 Archaeplastida
Pp3c4_4040V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Smo404767 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
Smo409950 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Smo413232 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Solyc01g102300.3.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 Archaeplastida
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Solyc06g069600.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc07g043580.4.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 Archaeplastida
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e006917_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e018003_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e019392_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e021883_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e029147_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e034339_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e041668_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.03 LandPlants
AT2G14760 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
AT4G00120 GT140, IND1, IND, EDA33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
AT4G33880 RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 LandPlants
AT5G09750 HEC3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
AT5G61270 PIF7 phytochrome-interacting factor7 0.01 LandPlants
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 LandPlants
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.02 LandPlants
Gb_13867 No alias transcription factor (bHLH). PIF red/far-red light... 0.01 LandPlants
Gb_30387 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os07g39940.1 No alias transcription factor (bHLH) 0.04 LandPlants
MA_83500g0010 No alias transcription factor (bHLH) 0.02 LandPlants
Pp3c4_4040V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
Smo404767 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 LandPlants
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc02g093280.2.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.03 LandPlants
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.04 LandPlants
Solyc06g069600.3.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e021883_P001 No alias transcription factor (bHLH) 0.04 LandPlants
Zm00001e029147_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e034339_P001 No alias transcription factor (bHLH) 0.03 LandPlants
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.01 SeedPlants
AT2G14760 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 SeedPlants
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 SeedPlants
AT4G33880 RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 SeedPlants
AT5G61270 PIF7 phytochrome-interacting factor7 0.01 SeedPlants
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.01 SeedPlants
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 SeedPlants
Gb_13867 No alias transcription factor (bHLH). PIF red/far-red light... 0.01 SeedPlants
Gb_30387 No alias transcription factor (bHLH) 0.02 SeedPlants
LOC_Os07g39940.1 No alias transcription factor (bHLH) 0.02 SeedPlants
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.01 SeedPlants
Zm00001e020477_P001 No alias transcription factor (bHLH) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011598 bHLH_dom 157 196
No external refs found!