1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00012p00245710

AMTR_s00012p00245710 (ATLAC17, LAC17,...)


Aliases : ATLAC17, LAC17, evm_27.TU.AmTr_v1.0_scaffold00012.228

Description : Cell wall.lignin.monolignol conjugation and polymerization.lignin laccase


Gene families : OG0000044 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00245710
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AT2G29130 ATLAC2, LAC2 laccase 2 0.07 OrthoFinder output from all 47 species
AT2G38080 LAC4, IRX12,... Laccase/Diphenol oxidase family protein 0.07 OrthoFinder output from all 47 species
AT2G40370 LAC5 laccase 5 0.03 OrthoFinder output from all 47 species
AT5G01190 LAC10 laccase 10 0.07 OrthoFinder output from all 47 species
AT5G05390 LAC12 laccase 12 0.07 OrthoFinder output from all 47 species
AT5G58910 LAC16 laccase 16 0.04 OrthoFinder output from all 47 species
AT5G60020 ATLAC17, LAC17 laccase 17 0.07 OrthoFinder output from all 47 species
Adi_g011355 LAC16 EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Adi_g075486 ATLAC17, LAC17 EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Aev_g04005 ATLAC2, LAC2 EC_1.10 oxidoreductase acting on diphenol or related... 0.04 OrthoFinder output from all 47 species
Als_g12729 ATLAC17, LAC17 EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Als_g18232 ATLAC2, LAC2 EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Als_g19616 LAC7 EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Aop_g18020 LAC12 EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Aop_g69868 ATLAC17, LAC17 EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Aspi01Gene12021.t1 ATLAC17, LAC17,... EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Aspi01Gene14893.t1 LAC3, Aspi01Gene14893 EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Aspi01Gene54569.t1 ATLAC17, LAC17,... EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Aspi01Gene69890.t2 LAC11, Aspi01Gene69890 EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Ceric.04G058400.1 ATLAC17, LAC17,... EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Ceric.30G049200.1 LAC10, Ceric.30G049200 EC_1.10 oxidoreductase acting on diphenol or related... 0.04 OrthoFinder output from all 47 species
Dac_g03861 LAC1, ATLAC1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g40679 LAC11 EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Dcu_g01442 LAC4, IRX12,... EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Dcu_g50324 LAC16 EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Dde_g46244 LAC6 EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Ehy_g09537 ATLAC17, LAC17 EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Ehy_g14197 ATLAC17, LAC17 EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Ehy_g19783 LAC11 EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
GSVIVT01008406001 LAC1, ATLAC1 Laccase-1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01012335001 LAC14 Laccase-14 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01012337001 TT10, LAC15, ATLAC15 Laccase-15 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01012343001 LAC14 Laccase-14 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01012359001 TT10, LAC15, ATLAC15 Laccase-15 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01012745001 LAC14 Laccase-15 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01016490001 ATLAC17, LAC17 Cell wall.lignin.monolignol conjugation and... 0.04 OrthoFinder output from all 47 species
GSVIVT01016513001 ATLAC17, LAC17 Cell wall.lignin.monolignol conjugation and... 0.05 OrthoFinder output from all 47 species
GSVIVT01024795001 LAC4, IRX12,... Cell wall.lignin.monolignol conjugation and... 0.06 OrthoFinder output from all 47 species
GSVIVT01025046001 ATLAC17, LAC17 Cell wall.lignin.monolignol conjugation and... 0.05 OrthoFinder output from all 47 species
GSVIVT01032744001 LAC12 Laccase-12 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01034003001 LAC4, IRX12,... Cell wall.lignin.monolignol conjugation and... 0.06 OrthoFinder output from all 47 species
GSVIVT01034137001 ATLAC17, LAC17 Cell wall.lignin.monolignol conjugation and... 0.06 OrthoFinder output from all 47 species
GSVIVT01034138001 ATLAC17, LAC17 Cell wall.lignin.monolignol conjugation and... 0.06 OrthoFinder output from all 47 species
GSVIVT01034139001 ATLAC17, LAC17 Cell wall.lignin.monolignol conjugation and... 0.03 OrthoFinder output from all 47 species
GSVIVT01034140001 ATLAC17, LAC17 Laccase-17 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01034146001 ATLAC2, LAC2 Cell wall.lignin.monolignol conjugation and... 0.04 OrthoFinder output from all 47 species
GSVIVT01034817001 LAC14 Laccase-15 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01034820001 LAC14 Laccase-14 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01034823001 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
GSVIVT01034828001 LAC14 Laccase-14 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01034842001 TT10, LAC15, ATLAC15 Laccase-15 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01034850001 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Gb_00462 ATLAC17, LAC17 lignin laccase 0.03 OrthoFinder output from all 47 species
Gb_05987 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.04 OrthoFinder output from all 47 species
Gb_05991 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.04 OrthoFinder output from all 47 species
Gb_05999 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.03 OrthoFinder output from all 47 species
Gb_11065 LAC11 Laccase-11 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_14613 ATLAC17, LAC17 lignin laccase 0.03 OrthoFinder output from all 47 species
Gb_33400 LAC12 Laccase-3 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Gb_34469 LAC12 Laccase-12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os01g62480.1 ATLAC17, LAC17,... lignin laccase 0.03 OrthoFinder output from all 47 species
LOC_Os01g63200.1 LAC7, LOC_Os01g63200 Laccase-8 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os03g16610.1 ATLAC17, LAC17,... lignin laccase 0.03 OrthoFinder output from all 47 species
LOC_Os06g37080.1 LOC_Os06g37080 Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.03 OrthoFinder output from all 47 species
LOC_Os10g20610.1 LAC7, LOC_Os10g20610 Laccase-15 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os11g42200.1 LAC7, LOC_Os11g42200 Laccase-19 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os11g42220.1 LAC7, LOC_Os11g42220 Laccase-20 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Len_g14897 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Len_g50673 LAC4, IRX12,... EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Len_g58335 ATLAC17, LAC17 EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
MA_10431084g0010 ATLAC17, LAC17 Laccase-17 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10433259g0010 LAC11 Laccase-2 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
MA_118833g0010 ATLAC17, LAC17 lignin laccase 0.06 OrthoFinder output from all 47 species
MA_136989g0010 LAC6 Laccase-6 OS=Arabidopsis thaliana (sp|q9zpy2|lac6_arath... 0.04 OrthoFinder output from all 47 species
MA_205016g0010 ATLAC17, LAC17 Laccase-4 OS=Oryza sativa subsp. japonica... 0.06 OrthoFinder output from all 47 species
MA_208621g0010 LAC3 Laccase-2 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
MA_21316g0010 LAC12 Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.03 OrthoFinder output from all 47 species
MA_379710g0010 ATLAC17, LAC17 Laccase-13 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
MA_488981g0010 LAC3 Laccase-13 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_5717063g0010 ATLAC17, LAC17 Laccase-4 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
MA_785232g0010 ATLAC17, LAC17 Laccase-4 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
MA_9337419g0010 ATLAC2, LAC2 Laccase-22 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
Mp3g20310.1 LAC11 Laccase-2 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Msp_g09068 ATLAC2, LAC2 EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Msp_g10958 LAC11 EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Msp_g26096 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Msp_g38331 LAC11 EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Nbi_g26479 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Nbi_g30833 LAC4, IRX12,... EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Ore_g23776 LAC4, IRX12,... EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Ore_g42145 LAC11 EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Pnu_g28314 LAC11 EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Ppi_g31973 ATLAC17, LAC17 EC_1.10 oxidoreductase acting on diphenol or related... 0.04 OrthoFinder output from all 47 species
Ppi_g33390 ATLAC2, LAC2 EC_1.10 oxidoreductase acting on diphenol or related... 0.04 OrthoFinder output from all 47 species
Ppi_g60706 LAC4, IRX12,... EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Smo104957 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.03 OrthoFinder output from all 47 species
Smo105894 ATLAC17, LAC17 Laccase-4 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Solyc01g008830.2.1 Solyc01g008830 Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.04 OrthoFinder output from all 47 species
Solyc02g062660.2.1 LAC11, Solyc02g062660 Laccase-11 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc05g052340.4.1 LAC12, Solyc05g052340 Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.04 OrthoFinder output from all 47 species
Solyc05g052360.2.1 LAC5, Solyc05g052360 Laccase-12 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Solyc05g052390.3.1 LAC12, Solyc05g052390 Laccase-12 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc05g052400.3.1 LAC12, Solyc05g052400 Laccase-12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc06g048860.3.1 LAC5, Solyc06g048860 Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.04 OrthoFinder output from all 47 species
Solyc06g050530.3.1 LAC5, Solyc06g050530 Laccase-12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc06g076330.3.1 ATLAC2, LAC2,... lignin laccase 0.03 OrthoFinder output from all 47 species
Solyc06g082240.2.1 LAC3, Solyc06g082240 Laccase-3 OS=Arabidopsis thaliana (sp|q56yt0|lac3_arath... 0.04 OrthoFinder output from all 47 species
Solyc07g049460.3.1 LAC7, Solyc07g049460 Laccase-7 OS=Arabidopsis thaliana (sp|q9sr40|lac7_arath... 0.03 OrthoFinder output from all 47 species
Solyc09g010990.3.1 ATLAC17, LAC17,... lignin laccase 0.03 OrthoFinder output from all 47 species
Solyc09g014240.4.1 LAC4, IRX12,... lignin laccase 0.04 OrthoFinder output from all 47 species
Solyc10g076830.2.1 LAC4, IRX12,... lignin laccase 0.03 OrthoFinder output from all 47 species
Solyc11g008030.3.1 sks8, Solyc11g008030 Monocopper oxidase-like protein SKU5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc12g056820.2.1 TT10, LAC15,... Laccase-15 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g15095 ATLAC17, LAC17 EC_1.10 oxidoreductase acting on diphenol or related... 0.03 OrthoFinder output from all 47 species
Spa_g23367 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 OrthoFinder output from all 47 species
Tin_g02744 LAC12 EC_1.10 oxidoreductase acTing on diphenol or related... 0.03 OrthoFinder output from all 47 species
Tin_g04091 LAC11 EC_1.10 oxidoreductase acTing on diphenol or related... 0.04 OrthoFinder output from all 47 species
Zm00001e001209_P001 ATLAC17, LAC17,... lignin laccase 0.03 OrthoFinder output from all 47 species
Zm00001e019303_P001 ATLAC2, LAC2,... lignin laccase 0.05 OrthoFinder output from all 47 species
Zm00001e019315_P001 ATLAC17, LAC17,... lignin laccase 0.03 OrthoFinder output from all 47 species
Zm00001e019316_P001 ATLAC17, LAC17,... lignin laccase 0.03 OrthoFinder output from all 47 species
Zm00001e019412_P001 LAC12, Zm00001e019412 Laccase-3 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Zm00001e021102_P001 LAC7, Zm00001e021102 Laccase-15 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e023886_P001 LAC14, Zm00001e023886 Putative laccase-9 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e028830_P002 LAC12, Zm00001e028830 Laccase-3 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Zm00001e031826_P001 ATLAC17, LAC17,... lignin laccase 0.05 OrthoFinder output from all 47 species
Zm00001e032635_P001 LAC7, Zm00001e032635 Laccase-14 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011706 Cu-oxidase_C 431 561
IPR011707 Cu-oxidase_N 39 152
IPR001117 Cu-oxidase_2nd 165 315
No external refs found!