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  5. AMTR_s00012p00067980

AMTR_s00012p00067980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.26

Description : Chromatin organisation.histones.H2B-type histone


Gene families : OG0000176 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00067980
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Adi_g021863 No alias histone *(H2B) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0005.g008911 HTB4 histone *(H2B) & original description: CDS=50-517 0.03 OrthoFinder output from all 47 species
LOC_Os01g06010.1 HTB11, LOC_Os01g06010 histone (H2B) 0.02 OrthoFinder output from all 47 species
Lfl_g23045 HTB4 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_15750V3.1 HTB4, Pp3c17_15750 Histone superfamily protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017109 No alias histone *(H2B) & original description: CDS=1-441 0.03 OrthoFinder output from all 47 species
Smo182308 HTB4 Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder output from all 47 species
Solyc03g071620.2.1 Solyc03g071620 histone (H2B) 0.03 OrthoFinder output from all 47 species
Solyc06g074780.1.1 HTB4, Solyc06g074780 histone (H2B) 0.04 OrthoFinder output from all 47 species
Solyc06g075800.1.1 HTB11, Solyc06g075800 histone (H2B) 0.03 OrthoFinder output from all 47 species
Solyc12g011455.1.1 HTB11, Solyc12g011455 histone (H2B) 0.07 OrthoFinder output from all 47 species
Zm00001e019346_P001 HTB4, Zm00001e019346 histone (H2B) 0.03 OrthoFinder output from all 47 species
Zm00001e038466_P001 HTB1, Zm00001e038466 histone (H2B) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 58 124
No external refs found!