1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00011p00245550

AMTR_s00011p00245550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.144

Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana


Gene families : OG0006888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006888_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00245550

Target Alias Description ECC score Gene Family Method Actions
AT5G35970 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 OrthoFinder output from all 47 species
Adi_g009690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05515 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g13293 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09323 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g09081 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g19085 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0225.g058913 No alias not classified & original description: CDS=1-1656 0.03 OrthoFinder output from all 47 species
Cba_g06579 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.19G036700.1 Ceric.19G036700 not classified & original description: pacid=50576348... 0.09 OrthoFinder output from all 47 species
Dac_g15964 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g01970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g37707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15105 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01024253001 No alias Regulator of nonsense transcripts 1 homolog... 0.03 OrthoFinder output from all 47 species
Gb_07655 No alias Regulator of nonsense transcripts 1 homolog... 0.08 OrthoFinder output from all 47 species
LOC_Os09g04440.1 LOC_Os09g04440 Regulator of nonsense transcripts 1 homolog... 0.03 OrthoFinder output from all 47 species
Lfl_g36332 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_10434072g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10435849g0020 No alias Regulator of nonsense transcripts 1 homolog... 0.06 OrthoFinder output from all 47 species
Mp3g22970.1 No alias Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
Msp_g02098 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08978 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16466 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04666 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g36707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo90782 No alias Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
Solyc03g097370.4.1 Solyc03g097370 Regulator of nonsense transcripts 1 homolog... 0.03 OrthoFinder output from all 47 species
Tin_g09516 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!