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  5. AMTR_s00010p00267640

AMTR_s00010p00267640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.541

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0001379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001379_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00267640

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00119840 evm_27.TU.AmTr_v1... O-fucosyltransferase 34 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G14020 No alias O-fucosyltransferase family protein 0.05 OrthoFinder output from all 47 species
Adi_g092848 No alias rhamnosyltransferase *(RRT) & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g18194 No alias rhamnosyltransferase *(RRT) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15522 No alias rhamnosyltransferase *(RRT) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G096200.1 Ceric.09G096200 rhamnosyltransferase *(RRT) & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g10880 No alias rhamnosyltransferase *(RRT) & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os06g17390.1 LOC_Os06g17390 rhamnosyltransferase 0.02 OrthoFinder output from all 47 species
Len_g18555 No alias rhamnosyltransferase *(RRT) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g26305 No alias rhamnosyltransferase *(RRT) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40298 No alias rhamnosyltransferase *(RRT) & original description: none 0.03 OrthoFinder output from all 47 species
MA_88334g0020 No alias no description available(sp|q93zr8|rrt2_arath : 464.0) 0.03 OrthoFinder output from all 47 species
Ore_g29849 No alias rhamnosyltransferase *(RRT) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38030 No alias rhamnosyltransferase *(RRT) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41169 No alias rhamnosyltransferase *(RRT) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44165 No alias rhamnosyltransferase *(RRT) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02274 No alias rhamnosyltransferase *(RRT) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12263 No alias rhamnosyltransferase *(RRT) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc03g114730.3.1 Solyc03g114730 rhamnosyltransferase 0.03 OrthoFinder output from all 47 species
Solyc12g038670.2.1 Solyc12g038670 rhamnosyltransferase 0.02 OrthoFinder output from all 47 species
Tin_g11044 No alias rhamnosyltransferase *(RRT) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g16519 No alias rhamnosyltransferase *(RRT) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e030982_P001 Zm00001e030982 rhamnosyltransferase 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR019378 GDP-Fuc_O-FucTrfase 458 777
IPR001841 Znf_RING 235 275
No external refs found!