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  5. AMTR_s00010p00265970

AMTR_s00010p00265970 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.517

Description : Casparian strip membrane protein 3 OS=Sorghum bicolor


Gene families : OG0001933 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001933_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00265970
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00176090 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Ricinus communis 0.04 OrthoFinder output from all 47 species
AMTR_s00016p00177650 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00016p00177940 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00016p00178190 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Vitis vinifera 0.06 OrthoFinder output from all 47 species
AMTR_s00057p00158850 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G03700 No alias Uncharacterised protein family (UPF0497) 0.04 OrthoFinder output from all 47 species
AT1G14160 No alias Uncharacterised protein family (UPF0497) 0.05 OrthoFinder output from all 47 species
AT2G27370 No alias Uncharacterised protein family (UPF0497) 0.08 OrthoFinder output from all 47 species
AT2G36100 No alias Uncharacterised protein family (UPF0497) 0.07 OrthoFinder output from all 47 species
AT3G06390 No alias Uncharacterised protein family (UPF0497) 0.04 OrthoFinder output from all 47 species
AT3G11550 No alias Uncharacterised protein family (UPF0497) 0.07 OrthoFinder output from all 47 species
AT4G15610 No alias Uncharacterised protein family (UPF0497) 0.03 OrthoFinder output from all 47 species
AT4G20390 No alias Uncharacterised protein family (UPF0497) 0.04 OrthoFinder output from all 47 species
AT5G06200 No alias Uncharacterised protein family (UPF0497) 0.08 OrthoFinder output from all 47 species
AT5G15290 No alias Uncharacterised protein family (UPF0497) 0.04 OrthoFinder output from all 47 species
AT5G44550 No alias Uncharacterised protein family (UPF0497) 0.04 OrthoFinder output from all 47 species
GSVIVT01008618001 No alias CASP-like protein 1F1 OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
GSVIVT01010992001 No alias CASP-like protein 1E1 OS=Vitis vinifera 0.06 OrthoFinder output from all 47 species
GSVIVT01020544001 No alias CASP-like protein 1C2 OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
GSVIVT01037957001 No alias CASP-like protein 1B2 OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
Gb_11697 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.05 OrthoFinder output from all 47 species
Gb_12158 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_12159 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.02 OrthoFinder output from all 47 species
Gb_26811 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_40900 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 OrthoFinder output from all 47 species
Gb_40903 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g13560.1 LOC_Os01g13560 CASP-like protein 1C1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os01g26120.1 LOC_Os01g26120 CASP-like protein 1E1 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
LOC_Os02g36845.1 LOC_Os02g36845 Casparian strip membrane protein 7 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
LOC_Os02g51010.1 LOC_Os02g51010 Casparian strip membrane protein 4 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
LOC_Os04g38690.1 LOC_Os04g38690 Casparian strip membrane protein 1 OS=Oryza rufipogon... 0.05 OrthoFinder output from all 47 species
LOC_Os04g58760.1 LOC_Os04g58760 Casparian strip membrane protein 1 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
LOC_Os05g15630.1 LOC_Os05g15630 CASP-like protein BLE3 OS=Oryza sativa subsp. indica... 0.05 OrthoFinder output from all 47 species
LOC_Os06g12500.1 LOC_Os06g12500 Casparian strip membrane protein 3 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
LOC_Os08g01160.1 LOC_Os08g01160 Casparian strip membrane protein 2 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
Lfl_g29809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_1041g0010 No alias Casparian strip membrane protein 2 OS=Triphysaria... 0.03 OrthoFinder output from all 47 species
MA_10431939g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.02 OrthoFinder output from all 47 species
MA_3155878g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_5227376g0010 No alias Casparian strip membrane protein 1 OS=Picea glauca... 0.04 OrthoFinder output from all 47 species
MA_5618864g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.05 OrthoFinder output from all 47 species
MA_64798g0010 No alias Casparian strip membrane protein 1 OS=Picea glauca... 0.04 OrthoFinder output from all 47 species
MA_67384g0020 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.04 OrthoFinder output from all 47 species
MA_90653g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_93690g0010 No alias Casparian strip membrane protein 1 OS=Pinus taeda... 0.04 OrthoFinder output from all 47 species
MA_94788g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.06 OrthoFinder output from all 47 species
Mp3g20970.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pir_g23305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g067300.3.1 Solyc01g067300 CASP-like protein 1D1 OS=Populus trichocarpa... 0.03 OrthoFinder output from all 47 species
Solyc01g067330.3.1 Solyc01g067330 CASP-like protein 1E1 OS=Glycine max... 0.06 OrthoFinder output from all 47 species
Solyc02g067190.4.1 Solyc02g067190 Casparian strip membrane protein 1 OS=Solanum tuberosum... 0.04 OrthoFinder output from all 47 species
Solyc02g069730.3.1 Solyc02g069730 CASP-like protein 1B1 OS=Ricinus communis... 0.03 OrthoFinder output from all 47 species
Solyc02g088160.4.1 Solyc02g088160 Casparian strip membrane protein 3 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Solyc03g097720.4.1 Solyc03g097720 CASP-like protein 1F1 OS=Vitis vinifera... 0.05 OrthoFinder output from all 47 species
Solyc03g097730.2.1 Solyc03g097730 CASP-like protein 1F1 OS=Ricinus communis... 0.04 OrthoFinder output from all 47 species
Solyc04g005620.3.1 Solyc04g005620 Casparian strip membrane protein 2 OS=Solanum demissum... 0.08 OrthoFinder output from all 47 species
Solyc06g072550.3.1 Solyc06g072550 CASP-like protein 1F1 OS=Vitis vinifera... 0.01 OrthoFinder output from all 47 species
Solyc06g074230.3.1 Solyc06g074230 Casparian strip membrane protein 2 OS=Triphysaria... 0.09 OrthoFinder output from all 47 species
Solyc09g010200.4.1 Solyc09g010200 Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.09 OrthoFinder output from all 47 species
Solyc10g083250.2.1 Solyc10g083250 Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.08 OrthoFinder output from all 47 species
Zm00001e003216_P001 Zm00001e003216 CASP-like protein 1B1 OS=Zea mays (sp|b6tuh4|cspl2_maize : 130.0) 0.06 OrthoFinder output from all 47 species
Zm00001e006491_P001 Zm00001e006491 Casparian strip membrane protein 2 OS=Zea mays... 0.09 OrthoFinder output from all 47 species
Zm00001e015806_P001 Zm00001e015806 Casparian strip membrane protein 3 OS=Sorghum bicolor... 0.06 OrthoFinder output from all 47 species
Zm00001e021080_P001 Zm00001e021080 CASP-like protein 1U4 OS=Sorghum bicolor... 0.09 OrthoFinder output from all 47 species
Zm00001e024279_P001 Zm00001e024279 Casparian strip membrane protein 2 OS=Sorghum bicolor... 0.08 OrthoFinder output from all 47 species
Zm00001e026902_P001 Zm00001e026902 CASP-like protein 1C2 OS=Zea mays (sp|b6szu6|cspl5_maize : 227.0) 0.05 OrthoFinder output from all 47 species
Zm00001e036094_P001 Zm00001e036094 Casparian strip membrane protein 1 OS=Zea mays... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR006702 CASP_dom 16 163
No external refs found!