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  5. AMTR_s00010p00263520

AMTR_s00010p00263520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.488

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00263520

Target Alias Description ECC score Gene Family Method Actions
AT3G60080 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G64920 CIP8 COP1-interacting protein 8 0.04 OrthoFinder output from all 47 species
Adi_g012552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g017038 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g088306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46210 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g05181 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.09 OrthoFinder output from all 47 species
Aspi01Gene63558.t1 Aspi01Gene63558 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0241.g059757 No alias not classified & original description: CDS=1-1179 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.7 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dac_g13726 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g01127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01134 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g19575 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
LOC_Os03g20870.1 LOC_Os03g20870 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
LOC_Os05g41520.1 RHC1A, LOC_Os05g41520 Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species
Len_g11022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_110029g0010 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.04 OrthoFinder output from all 47 species
Msp_g25662 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ore_g03817 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g00999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19690 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g089410.3.1 Solyc02g089410 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.04 OrthoFinder output from all 47 species
Zm00001e038273_P001 Zm00001e038273 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 148 190
No external refs found!