1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00010p00256660

AMTR_s00010p00256660 (OTP43,...)


Aliases : OTP43, evm_27.TU.AmTr_v1.0_scaffold00010.394

Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.OTP43 splicing factor


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00256660
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from all 47 species
GSVIVT01010329001 No alias Pentatricopeptide repeat-containing protein At3g04130,... 0.05 OrthoFinder output from all 47 species
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.05 OrthoFinder output from all 47 species
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 OrthoFinder output from all 47 species
Gb_21593 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.03 OrthoFinder output from all 47 species
Gb_23459 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.04 OrthoFinder output from all 47 species
Solyc03g116540.1.1 Solyc03g116540 Pentatricopeptide repeat-containing protein At1g52640,... 0.03 OrthoFinder output from all 47 species
Solyc03g117570.3.1 Solyc03g117570 Pentatricopeptide repeat-containing protein At1g80880,... 0.03 OrthoFinder output from all 47 species
Solyc04g076370.4.1 Solyc04g076370 Pentatricopeptide repeat-containing protein At2g27800,... 0.03 OrthoFinder output from all 47 species
Solyc09g082390.3.1 Solyc09g082390 Pentatricopeptide repeat-containing protein At3g22670,... 0.03 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016151 nickel cation binding IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 100 131
IPR002885 Pentatricopeptide_repeat 64 96
IPR002885 Pentatricopeptide_repeat 135 178
IPR002885 Pentatricopeptide_repeat 204 247
IPR002885 Pentatricopeptide_repeat 345 389
IPR002885 Pentatricopeptide_repeat 270 318
No external refs found!