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  5. AMTR_s00010p00244660

AMTR_s00010p00244660 (P40, AP40, RPSAA,...)


Aliases : P40, AP40, RPSAA, RP40, evm_27.TU.AmTr_v1.0_scaffold00010.322

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPSa component


Gene families : OG0002043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00244660

Target Alias Description ECC score Gene Family Method Actions
AT1G72370 P40, AP40, RPSAA, RP40 40s ribosomal protein SA 0.07 OrthoFinder output from all 47 species
Als_g09687 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.10G044300.1 P40, AP40,... component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.38G026900.1 P40, AP40,... component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cre10.g432800 P40, AP40, RPSAA, RP40 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Dac_g13313 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01016695001 P40, AP40, RPSAA, RP40 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os03g08440.1 P40, AP40,... component RPSa of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os07g42450.1 P40, AP40,... component RPSa of SSU proteome 0.05 OrthoFinder output from all 47 species
Lfl_g23586 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_10436984g0020 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.03 OrthoFinder output from all 47 species
MA_112104g0010 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp2g26290.1 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.05 OrthoFinder output from all 47 species
Msp_g20402 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c14_15700V3.1 P40, AP40,... 40s ribosomal protein SA B 0.04 OrthoFinder output from all 47 species
Pp3c14_17310V3.1 P40, AP40,... 40s ribosomal protein SA B 0.04 OrthoFinder output from all 47 species
Pp3c17_17600V3.1 P40, AP40,... 40s ribosomal protein SA 0.02 OrthoFinder output from all 47 species
Pp3c1_24120V3.1 P40, AP40,... 40s ribosomal protein SA 0.01 OrthoFinder output from all 47 species
Ppi_g02754 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g08753 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g08754 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Solyc03g019780.4.1 P40, AP40,... component RPSa of SSU proteome 0.05 OrthoFinder output from all 47 species
Solyc06g072120.3.1 P40, AP40,... component RPSa of SSU proteome 0.06 OrthoFinder output from all 47 species
Spa_g04678 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g04679 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g21179 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e000273_P001 P40, AP40,... component RPSa of SSU proteome 0.05 OrthoFinder output from all 47 species
Zm00001e010780_P001 P40, AP40,... component RPSa of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e038859_P001 P40, AP40,... component RPSa of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e038860_P002 P40, AP40,... component RPSa of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e038933_P001 P40, AP40,... component RPSa of SSU proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 14 181
No external refs found!