AMTR_s00010p00238460 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.294

Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.mCSF splicing factor

Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00010p00238460
Cluster	HCCA: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
Aev_g10007	CAF2, ATCAF2	component *(CAF) of CRS2-CAF plastidial RNA splicing...	0.03	OrthoFinder output from all 47 species
Aop_g38414	ATCAF1, CAF1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01013781001	CAF2, ATCAF2	CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
MA_14069g0010	No alias	CRS2-associated factor 1, mitochondrial OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001890	RNA-binding_CRM	272	355
IPR001890	RNA-binding_CRM	152	237

External Links

No external refs found!