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  5. AMTR_s00010p00233620

AMTR_s00010p00233620 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.273

Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.RAE1 scaffold nucleoporin


Gene families : OG0004854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004854_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00010p00233620

Target Alias Description ECC score Gene Family Method Actions
Aev_g30362 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species
MA_27152g0010 No alias Protein RAE1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ppi_g12839 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 111 142
IPR001680 WD40_repeat 23 56
IPR001680 WD40_repeat 68 99
IPR001680 WD40_repeat 247 274
No external refs found!