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  5. AMTR_s00010p00223040

AMTR_s00010p00223040 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.243

Description : COP1-interactive protein 1 OS=Arabidopsis thaliana


Gene families : OG0000964 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000964_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00223040

Target Alias Description ECC score Gene Family Method Actions
AT1G22060 No alias LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures;... 0.03 OrthoFinder output from all 47 species
AT5G41140 No alias Myosin heavy chain-related protein 0.05 OrthoFinder output from all 47 species
AT5G52280 No alias Myosin heavy chain-related protein 0.03 OrthoFinder output from all 47 species
Adi_g020038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0010.g012083 No alias not classified & original description: CDS=678-3254 0.05 OrthoFinder output from all 47 species
GSVIVT01008970001 No alias No description available 0.08 OrthoFinder output from all 47 species
GSVIVT01016161001 No alias WEB family protein At4g27595, chloroplastic... 0.04 OrthoFinder output from all 47 species
LOC_Os03g01710.1 LOC_Os03g01710 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os10g21940.1 LOC_Os10g21940 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os10g36060.1 LOC_Os10g36060 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os10g39950.1 LOC_Os10g39950 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g08370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03505 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10437003g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g39450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g072630.4.1 Solyc04g072630 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e018560_P002 Zm00001e018560 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e037927_P004 Zm00001e037927 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019448 NT-C2 11 141
No external refs found!