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  5. AMTR_s00010p00213530

AMTR_s00010p00213530 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.214

Description : Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana


Gene families : OG0018315 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0018315_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00010p00213530

Target Alias Description ECC score Gene Family Method Actions
AT3G18020 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
Gb_06808 No alias Pentatricopeptide repeat-containing protein At3g18020... 0.04 OrthoFinder output from all 47 species
Solyc03g118790.3.1 Solyc03g118790 Pentatricopeptide repeat-containing protein At3g18020... 0.07 OrthoFinder output from all 47 species
Zm00001e010959_P002 Zm00001e010959 Pentatricopeptide repeat-containing protein At3g18020... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 55 83
IPR002885 Pentatricopeptide_repeat 190 236
IPR002885 Pentatricopeptide_repeat 619 662
IPR002885 Pentatricopeptide_repeat 479 528
IPR002885 Pentatricopeptide_repeat 588 617
IPR002885 Pentatricopeptide_repeat 377 404
IPR002885 Pentatricopeptide_repeat 553 575
IPR002885 Pentatricopeptide_repeat 160 187
IPR002885 Pentatricopeptide_repeat 334 365
IPR002885 Pentatricopeptide_repeat 439 472
No external refs found!