1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00010p00129090

AMTR_s00010p00129090 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.85

Description : GDT1-like protein 5 OS=Arabidopsis thaliana


Gene families : OG0000681 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000681_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00129090
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT5G36290 No alias Uncharacterized protein family (UPF0016) 0.03 OrthoFinder output from all 47 species
Als_g48797 No alias manganese/calcium cation transporter *(BICAT) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene13682.t1 Aspi01Gene13682 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016016 No alias manganese/calcium cation transporter *(BICAT) & original... 0.03 OrthoFinder output from all 47 species
Cba_g17433 No alias manganese/calcium cation transporter *(BICAT) & original... 0.02 OrthoFinder output from all 47 species
Cre17.g731300 No alias GDT1-like protein 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g02609 No alias manganese/calcium cation transporter *(BICAT) & original... 0.03 OrthoFinder output from all 47 species
Mp5g10930.1 No alias manganese/calcium cation transporter (BICAT) 0.02 OrthoFinder output from all 47 species
Msp_g02321 No alias manganese/calcium cation transporter *(BICAT) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019614 No alias manganese/calcium cation transporter *(BICAT) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005048 signal sequence binding IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
InterPro domains Description Start Stop
IPR001727 Gdt1 11 84
IPR001727 Gdt1 144 219
No external refs found!