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  5. AMTR_s00009p00268610

AMTR_s00009p00268610 (emb1220,...)


Aliases : emb1220, evm_27.TU.AmTr_v1.0_scaffold00009.430

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).PRPF31 snRNP component


Gene families : OG0005384 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005384_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00268610
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Adi_g002410 emb1220 component *(PRPF31) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001107.12 emb1220 RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Solyc08g078430.4.1 emb1220, Solyc08g078430 protein factor PRPF31 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
Spa_g06148 emb1220 component *(PRPF31) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006184 obsolete GTP catabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR019175 Prp31_C 336 455
IPR002687 Nop_dom 189 333
IPR012976 NOSIC 94 146
No external refs found!