AMTR_s00009p00259890 (ATPCNA1, PCNA1,...)

Aliases : ATPCNA1, PCNA1, evm_27.TU.AmTr_v1.0_scaffold00009.315

Description : Cell cycle.interphase.DNA replication.elongation.DNA-tracking platform.PCNA sliding clamp protein

Gene families : OG0002250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00009p00259890
Cluster	HCCA: Cluster_34

Target	Alias	Description	ECC score	Gene Family Method
AT1G07370	ATPCNA1, PCNA1	proliferating cellular nuclear antigen 1	0.06	OrthoFinder output from all 47 species
Adi_g020149	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g07143	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g50349	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g11632	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g20041	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g30432	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene00975.t1	ATPCNA1, PCNA1,...	sliding clamp protein *(PCNA) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene47926.t1	ATPCNA1, PCNA1,...	sliding clamp protein *(PCNA) & original description: none	0.06	OrthoFinder output from all 47 species
Ceric.21G042200.1	ATPCNA1, PCNA1,...	sliding clamp protein *(PCNA) & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020553.141	ATPCNA1, PCNA1	Cell cycle.interphase.DNA...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021319.67	ATPCNA1, PCNA1	Cell cycle.interphase.DNA...	0.03	OrthoFinder output from all 47 species
Cre12.g515850	ATPCNA1, PCNA1	Cell cycle.interphase.DNA...	0.04	OrthoFinder output from all 47 species
Dac_g03057	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g40322	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01024815001	PCNA2, ATPCNA2	Cell cycle.interphase.DNA...	0.07	OrthoFinder output from all 47 species
Gb_11143	ATPCNA1, PCNA1	sliding clamp protein (PCNA)	0.04	OrthoFinder output from all 47 species
LOC_Os02g56130.1	PCNA2, ATPCNA2,...	sliding clamp protein (PCNA)	0.03	OrthoFinder output from all 47 species
Len_g11664	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.05	OrthoFinder output from all 47 species
MA_83835g0010	ATPCNA1, PCNA1	sliding clamp protein (PCNA)	0.06	OrthoFinder output from all 47 species
Mp2g02690.1	PCNA2, ATPCNA2	sliding clamp protein (PCNA)	0.02	OrthoFinder output from all 47 species
Nbi_g07886	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g26451	No alias	sliding clamp protein *(PCNA) & original description: none	0.05	OrthoFinder output from all 47 species
Solyc06g076660.3.1	PCNA2, ATPCNA2,...	sliding clamp protein (PCNA)	0.07	OrthoFinder output from all 47 species
Spa_g12144	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.08	OrthoFinder output from all 47 species
Spa_g12145	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g51877	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.08	OrthoFinder output from all 47 species
Tin_g12734	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.06	OrthoFinder output from all 47 species
Zm00001e016159_P001	PCNA2, ATPCNA2,...	sliding clamp protein (PCNA)	0.05	OrthoFinder output from all 47 species
Zm00001e023660_P001	PCNA2, ATPCNA2,...	sliding clamp protein (PCNA)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006275	regulation of DNA replication	IEA	Interproscan
MF	GO:0008047	enzyme activator activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030337	DNA polymerase processivity factor activity	IEA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043626	PCNA complex	IEA	Interproscan
CC	GO:0044796	DNA polymerase processivity factor complex	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:0140677	molecular function activator activity	None	Extended
CC	GO:0150005	enzyme activator complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000808	origin recognition complex	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005664	nuclear origin of replication recognition complex	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009147	pyrimidine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009211	pyrimidine deoxyribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009219	pyrimidine deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	HCCA
BP	GO:0046080	dUTP metabolic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0046854	phosphatidylinositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022649	Pr_cel_nuc_antig_C	127	254
IPR022648	Pr_cel_nuc_antig_N	1	124

External Links

No external refs found!

AMTR_s00009p00259890 (ATPCNA1, PCNA1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation