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  5. AMTR_s00009p00253500

AMTR_s00009p00253500 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.266

Description : RNA biosynthesis.transcriptional activation.JUMONJI transcription factor


Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00253500

Target Alias Description ECC score Gene Family Method Actions
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.07 OrthoFinder output from all 47 species
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.08 OrthoFinder output from all 47 species
AT4G20400 PKDM7B, JMJ14 JUMONJI 14 0.03 OrthoFinder output from all 47 species
Adi_g055868 No alias histone demethylase *(KDM5) & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g056689 PKDM7D not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107372 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g15008 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08112 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05144 No alias histone demethylase *(KDM5) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g62631 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13634 PKDM7D histone demethylase *(PKDM7) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene28386.t1 Aspi01Gene28386 histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34964.t2 PKDM7D, Aspi01Gene34964 histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38469.t1 PKDM7D, Aspi01Gene38469 histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000131 PKDM7D histone demethylase *(PKDM7) & original description: CDS=166-5457 0.02 OrthoFinder output from all 47 species
Azfi_s0103.g044628 PKDM7D histone demethylase *(PKDM7) & original description: CDS=238-3396 0.03 OrthoFinder output from all 47 species
Ceric.01G024900.1 Ceric.01G024900 histone demethylase *(KDM5) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.09G000100.1 PKDM7D, Ceric.09G000100 histone demethylase *(PKDM7) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.28G058700.1 PKDM7D, Ceric.28G058700 histone demethylase *(PKDM7) & original description:... 0.03 OrthoFinder output from all 47 species
Cre12.g514250 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
Dcu_g07179 No alias histone demethylase *(KDM5) & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g06623 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08688 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21285 PKDM7B, JMJ14 histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.06 OrthoFinder output from all 47 species
GSVIVT01023517001 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.08 OrthoFinder output from all 47 species
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Gb_27431 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
LOC_Os05g10770.1 PKDM7D, LOC_Os05g10770 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.06 OrthoFinder output from all 47 species
Len_g14189 No alias histone demethylase *(KDM5) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18977 PKDM7D histone demethylase *(PKDM7) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g04280 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04296 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10434186g0010 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
MA_10436180g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_11526g0010 No alias Putative lysine-specific demethylase JMJ16... 0.06 OrthoFinder output from all 47 species
MA_91656g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp6g20340.1 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.06 OrthoFinder output from all 47 species
Msp_g13349 No alias histone demethylase *(KDM5) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38705 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17259 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17312 PKDM7D histone demethylase *(PKDM7) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g15994 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g29562 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07515 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01426 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013848 No alias histone demethylase *(KDM5) & original description: CDS=319-5874 0.04 OrthoFinder output from all 47 species
Sam_g11634 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc08g081000.3.1 Solyc08g081000 histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Spa_g17545 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12700 No alias histone demethylase *(KDM5) & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e013363_P002 Zm00001e013363 histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Zm00001e030938_P001 PKDM7D, Zm00001e030938 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR013637 Lys_sp_deMease-like_dom 982 1236
IPR013637 Lys_sp_deMease-like_dom 1265 1442
IPR013637 Lys_sp_deMease-like_dom 1539 1725
IPR013637 Lys_sp_deMease-like_dom 804 978
IPR019787 Znf_PHD-finger 1737 1781
IPR019787 Znf_PHD-finger 282 329
IPR004198 Znf_C5HC2 662 714
IPR001606 ARID_dom 108 189
IPR003349 JmjN 33 66
IPR003347 JmjC_dom 453 569
No external refs found!