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  5. AMTR_s00008p00118590

AMTR_s00008p00118590 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00008.50

Description : Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0005834 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005834_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00008p00118590

Target Alias Description ECC score Gene Family Method Actions
Ala_g15037 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g04164 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g00944 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g22462 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene57224.t1 Aspi01Gene57224 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0245.g059935 No alias not classified & original description: CDS=43-876 0.05 OrthoFinder output from all 47 species
Ceric.28G040000.1 Ceric.28G040000 not classified & original description: pacid=50570971... 0.04 OrthoFinder output from all 47 species
Dcu_g42345 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g17659 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01022998001 No alias Probable plastid-lipid-associated protein 4,... 0.02 OrthoFinder output from all 47 species
Gb_39531 No alias Probable plastid-lipid-associated protein 4,... 0.02 OrthoFinder output from all 47 species
Lfl_g00639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10435383g0010 No alias Probable plastid-lipid-associated protein 4,... 0.05 OrthoFinder output from all 47 species
Mp1g00160.1 No alias Probable plastid-lipid-associated protein 4,... 0.04 OrthoFinder output from all 47 species
Nbi_g02685 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g01288 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g35789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13948 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g52172 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Sam_g06190 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g044530.2.1 Solyc11g044530 Probable plastid-lipid-associated protein 4,... 0.05 OrthoFinder output from all 47 species
Spa_g50814 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11906 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
CC GO:0009507 chloroplast IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016149 translation release factor activity, codon specific IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006843 PAP/fibrillin_dom 90 250
No external refs found!