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  5. AMTR_s00008p00071380

AMTR_s00008p00071380 (PYM,...)


Aliases : PYM, evm_27.TU.AmTr_v1.0_scaffold00008.25

Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.PYM component


Gene families : OG0005414 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005414_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00008p00071380

Target Alias Description ECC score Gene Family Method Actions
AT1G11400 PYM partner of Y14-MAGO 0.03 OrthoFinder output from all 47 species
Aob_g10051 PYM component *(PYM) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Lfl_g01186 PYM component *(PYM) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Msp_g11721 PYM component *(PYM) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ppi_g00475 PYM component *(PYM) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Spa_g00221 PYM component *(PYM) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR015362 WIBG_mago-bd 18 44
No external refs found!