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  5. AMTR_s00007p00268660

AMTR_s00007p00268660 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.394

No description available


Gene families : OG0006766 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006766_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00268660
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT2G19870 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.06 OrthoFinder output from all 47 species
Adi_g026480 No alias MRM1-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015302001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_28913 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os01g53890.1 LOC_Os01g53890 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g08378 No alias MRM1-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g07424 No alias MRM1-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13699 No alias MRM1-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011404 No alias MRM1-type rRNA methyltransferase & original description:... 0.02 OrthoFinder output from all 47 species
Solyc05g017990.4.1 Solyc05g017990 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g06897 No alias MRM1-type rRNA methyltransferase & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g15281 No alias MRM1-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029079_P001 Zm00001e029079 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
MF GO:0008173 RNA methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016841 ammonia-lyase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
InterPro domains Description Start Stop
IPR013123 SpoU_subst-bd 114 197
IPR001537 SpoU_MeTrfase 217 340
No external refs found!