AMTR_s00007p00238950 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.249

Description : RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.RAV-type transcription factor

Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00007p00238950

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00018p00040300	NGA1,...	RNA biosynthesis.transcriptional activation.B3...	0.05	OrthoFinder output from all 47 species
AT1G68840	EDF2, AtRAV2,...	related to ABI3/VP1 2	0.03	OrthoFinder output from all 47 species
AT3G11580	No alias	AP2/B3-like transcriptional factor family protein	0.06	OrthoFinder output from all 47 species
Adi_g058439	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Adi_g058440	EDF3	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Adi_g114045	NGA1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g32030	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Ala_g04649	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g17658	TEM1, EDF1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Aob_g11266	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0102.g044523	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Ceric.20G072500.1	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Dac_g22480	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Dac_g39956	TEM1, EDF1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Dac_g43760	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Dde_g27008	EDF3	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g00006	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02670	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g16987	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01011947001	EDF2, AtRAV2,...	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
GSVIVT01019699001	NGA1	RNA biosynthesis.transcriptional activation.B3...	0.05	OrthoFinder output from all 47 species
GSVIVT01033902001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	OrthoFinder output from all 47 species
Gb_18035	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
Gb_33917	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
LOC_Os01g04750.1	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
LOC_Os01g04800.1	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
LOC_Os05g47650.1	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.05	OrthoFinder output from all 47 species
LOC_Os06g01860.1	LOC_Os06g01860	transcription factor (RAV/NGATHA)	0.07	OrthoFinder output from all 47 species
LOC_Os08g06120.1	NGA1, LOC_Os08g06120	transcription factor (RAV/NGATHA)	0.06	OrthoFinder output from all 47 species
Len_g36994	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
Len_g57809	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Lfl_g21540	NGA1	RAV/NGATHA-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_10436315g0010	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
MA_116574g0010	EDF3	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
MA_3834g0010	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
MA_70029g0010	NGA1	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
Ore_g44549	TEM1, EDF1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Pir_g14845	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
Pir_g49278	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Pnu_g19474	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g32810	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011516	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Sam_g30092	No alias	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Solyc04g007000.2.1	EDF4, RAV1,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
Solyc05g009790.1.1	EDF4, RAV1,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.05	OrthoFinder output from all 47 species
Solyc12g098460.2.1	Solyc12g098460	AP2/ERF and B3 domain-containing transcription factor...	0.05	OrthoFinder output from all 47 species
Spa_g28812	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.06	OrthoFinder output from all 47 species
Spa_g29371	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e000156_P001	NGA3, Zm00001e000156	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
Zm00001e016956_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	OrthoFinder output from all 47 species
Zm00001e020092_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	OrthoFinder output from all 47 species
Zm00001e026443_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.06	OrthoFinder output from all 47 species
Zm00001e028111_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
Zm00001e032325_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	OrthoFinder output from all 47 species
Zm00001e039393_P002	Zm00001e039393	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	200	308
IPR001471	AP2/ERF_dom	66	114

External Links

No external refs found!

AMTR_s00007p00238950 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation