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  5. AMTR_s00007p00238780

AMTR_s00007p00238780 (ATRPA2, ATRPA32A,...)


Aliases : ATRPA2, ATRPA32A, RPA2, ROR1, RPA32A, evm_27.TU.AmTr_v1.0_scaffold00007.248

Description : Cell cycle.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.RPA2 component


Gene families : OG0003036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00238780

Target Alias Description ECC score Gene Family Method Actions
AT2G24490 ATRPA2,... replicon protein A2 0.03 OrthoFinder output from all 47 species
Ala_g08671 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Ceric.28G042500.1 ATRPA32B,... component *(RPA2) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020684.26 No alias Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.03 OrthoFinder output from all 47 species
Cre02.g100000 ATRPA32B, RPA32B Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01029218001 ATRPA2,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01035537001 ATRPA2,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.04 OrthoFinder output from all 47 species
MA_10607g0010 ATRPA32B, RPA32B component RPA2 of single-stranded-DNA binding RPA... 0.03 OrthoFinder output from all 47 species
Mp5g22240.1 ATRPA32B, RPA32B component RPA2 of single-stranded-DNA binding RPA... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011148 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Sam_g01656 No alias component *(RPA2) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Solyc07g018300.3.1 ATRPA2,... component RPA2 of single-stranded-DNA binding RPA... 0.03 OrthoFinder output from all 47 species
Spa_g07705 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.04 OrthoFinder output from all 47 species
Spa_g07706 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.06 OrthoFinder output from all 47 species
Tin_g05426 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Zm00001e016275_P001 ATRPA2,... component RPA2 of single-stranded-DNA binding RPA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030337 DNA polymerase processivity factor activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
CC GO:0043626 PCNA complex IEP HCCA
CC GO:0044796 DNA polymerase processivity factor complex IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046854 phosphatidylinositol phosphate biosynthetic process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
CC GO:0150005 enzyme activator complex IEP HCCA
InterPro domains Description Start Stop
IPR014892 RPA_C 162 269
IPR004365 NA-bd_OB_tRNA 71 139
No external refs found!