AMTR_s00007p00236950 (ATMSH2, MSH2,...)

Aliases : ATMSH2, MSH2, evm_27.TU.AmTr_v1.0_scaffold00007.244

Description : DNA damage response.DNA repair mechanisms.mismatch repair (MMR).MSH2-x mismatch repair heterodimers.MSH2 component

Gene families : OG0004193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004193_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00007p00236950
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
AT3G18524	ATMSH2, MSH2	MUTS homolog 2	0.15	OrthoFinder output from all 47 species
Als_g31821	ATMSH2, MSH2	component *(MSH2) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species
Aspi01Gene34054.t1	ATMSH2, MSH2,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.01G010000.1	ATMSH2, MSH2,...	component *(MSH2) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001224.8	ATMSH2, MSH2	DNA damage response.DNA repair mechanisms.mismatch...	0.03	OrthoFinder output from all 47 species
Cre01.g003463	ATMSH2, MSH2	DNA mismatch repair protein MSH2 OS=Zea mays	0.06	OrthoFinder output from all 47 species
GSVIVT01008235001	ATMSH2, MSH2	DNA damage response.DNA repair mechanisms.mismatch...	0.02	OrthoFinder output from all 47 species
Gb_33909	ATMSH2, MSH2	component MSH2 of MSH2-x mismatch repair heterodimers	0.03	OrthoFinder output from all 47 species
Len_g07322	ATMSH2, MSH2	component *(MSH2) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species
MA_10431416g0010	ATMSH2, MSH2	DNA mismatch repair protein MSH2 OS=Zea mays...	0.07	OrthoFinder output from all 47 species
MA_59360g0010	ATMSH2, MSH2	component MSH2 of MSH2-x mismatch repair heterodimers	0.11	OrthoFinder output from all 47 species
MA_60574g0010	No alias	DNA mismatch repair protein MSH2 OS=Zea mays...	0.03	OrthoFinder output from all 47 species
Mp4g08420.1	ATMSH2, MSH2	component MSH2 of MSH2-x mismatch repair heterodimers	0.08	OrthoFinder output from all 47 species
Smo407609	ATMSH2, MSH2	DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Solyc06g069230.3.1	ATMSH2, MSH2,...	component MSH2 of MSH2-x mismatch repair heterodimers	0.1	OrthoFinder output from all 47 species
Zm00001e035455_P001	ATMSH2, MSH2,...	component MSH2 of MSH2-x mismatch repair heterodimers	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008378	galactosyltransferase activity	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007695	DNA_mismatch_repair_MutS-lik_N	22	127
IPR007860	DNA_mmatch_repair_MutS_con_dom	151	278
IPR000432	DNA_mismatch_repair_MutS_C	614	861
IPR007861	DNA_mismatch_repair_MutS_clamp	466	564
IPR007696	DNA_mismatch_repair_MutS_core	297	605

External Links

No external refs found!

AMTR_s00007p00236950 (ATMSH2, MSH2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation