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  5. AMTR_s00007p00179930

AMTR_s00007p00179930 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.142

Description : Carbohydrate metabolism.fermentation.alcoholic fermentation.pyruvate decarboxylase


Gene families : OG0001402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00179930
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT5G01330 PDC3 pyruvate decarboxylase-3 0.04 OrthoFinder output from all 47 species
AT5G54960 PDC2 pyruvate decarboxylase-2 0.04 OrthoFinder output from all 47 species
Aev_g06708 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.23G008800.1 Ceric.23G008800 EC_4.1 carbon-carbon lyase & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01024702001 No alias Carbohydrate metabolism.fermentation.alcoholic... 0.03 OrthoFinder output from all 47 species
Gb_12301 PDC2 pyruvate decarboxylase 0.03 OrthoFinder output from all 47 species
Gb_33734 PDC2 Pyruvate decarboxylase 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_36229 No alias Pyruvate decarboxylase 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os05g39310.1 LOC_Os05g39310 pyruvate decarboxylase 0.02 OrthoFinder output from all 47 species
LOC_Os05g39320.1 LOC_Os05g39320 pyruvate decarboxylase 0.02 OrthoFinder output from all 47 species
Len_g12319 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g21090.1 No alias pyruvate decarboxylase 0.03 OrthoFinder output from all 47 species
Smo157772 PDC2 Carbohydrate metabolism.fermentation.alcoholic... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0030976 thiamine pyrophosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005811 lipid droplet IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0012511 monolayer-surrounded lipid storage body IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR012001 Thiamin_PyroP_enz_TPP-bd_dom 44 210
IPR011766 TPP_enzyme_TPP-bd 451 575
IPR012000 Thiamin_PyroP_enz_cen_dom 241 348
No external refs found!