AMTR_s00006p00265300 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.275

Description : RNA biosynthesis.transcriptional activation.Trihelix transcription factor

Gene families : OG0002976 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002976_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00006p00265300
Cluster	HCCA: Cluster_109

Target	Alias	Description	ECC score	Gene Family Method
Aev_g14379	No alias	Trihelix-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.23G006300.1	Ceric.23G006300	Trihelix-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Msp_g15907	No alias	Trihelix-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g37468	No alias	Trihelix-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g07334	No alias	Trihelix-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g01272	No alias	Trihelix-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g06584	No alias	Trihelix-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e008247_P005	Zm00001e008247	transcription factor (Trihelix)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001048	Asp/Glu/Uridylate_kinase	257	466

External Links

No external refs found!