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  5. AMTR_s00006p00242700

AMTR_s00006p00242700 (EDA13, EDA19, SWA1,...)


Aliases : EDA13, EDA19, SWA1, evm_27.TU.AmTr_v1.0_scaffold00006.119

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.SWA1 assembly factor


Gene families : OG0005162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005162_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00242700

Target Alias Description ECC score Gene Family Method Actions
AT2G47990 EDA13, EDA19, SWA1 transducin family protein / WD-40 repeat family protein 0.03 OrthoFinder output from all 47 species
Azfi_s0011.g012641 EDA13, EDA19, SWA1 SSU processome assembly factor *(SWA1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011022001 EDA13, EDA19, SWA1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os07g12320.1 EDA13, EDA19,... SSU processome assembly factor (SWA1) 0.05 OrthoFinder output from all 47 species
MA_10221610g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g00830.1 EDA13, EDA19, SWA1 SSU processome assembly factor (SWA1) 0.03 OrthoFinder output from all 47 species
Msp_g09755 EDA13, EDA19, SWA1 SSU processome assembly factor *(SWA1) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g25206 EDA13, EDA19, SWA1 SSU processome assembly factor *(SWA1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g09628 No alias SSU processome assembly factor *(SWA1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e033137_P001 EDA13, EDA19,... SSU processome assembly factor (SWA1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR018983 U3_snoRNA-assocProt_15_C 369 514
IPR001680 WD40_repeat 114 152
IPR001680 WD40_repeat 158 195
IPR001680 WD40_repeat 206 235
IPR001680 WD40_repeat 240 285
No external refs found!