AMTR_s00005p00265020 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00005.221

Description : DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).exonuclease (EXO1)

Gene families : OG0003251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003251_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00005p00265020
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
Adi_g055328	No alias	homologous recombination repair exonuclease *(EXO1) &...	0.02	OrthoFinder output from all 47 species
Azfi_s0009.g011947	No alias	not classified & original description: CDS=18-1211	0.06	OrthoFinder output from all 47 species
Ceric.01G025500.1	Ceric.01G025500	homologous recombination repair exonuclease *(EXO1) &...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000403.40	No alias	DNA damage response.DNA repair mechanisms.homologous...	0.02	OrthoFinder output from all 47 species
Cre07.g353950	No alias	DNA damage response.DNA repair mechanisms.homologous...	0.01	OrthoFinder output from all 47 species
Dac_g38690	No alias	homologous recombination repair exonuclease *(EXO1) &...	0.04	OrthoFinder output from all 47 species
GSVIVT01008397001	No alias	DNA damage response.DNA repair mechanisms.homologous...	0.13	OrthoFinder output from all 47 species
GSVIVT01021316001	No alias	DNA damage response.DNA repair mechanisms.homologous...	0.15	OrthoFinder output from all 47 species
Gb_08129	No alias	homologous recombination repair exonuclease (EXO1)	0.01	OrthoFinder output from all 47 species
Gb_14686	No alias	homologous recombination repair exonuclease (EXO1)	0.09	OrthoFinder output from all 47 species
LOC_Os01g56940.1	LOC_Os01g56940	homologous recombination repair exonuclease (EXO1)	0.06	OrthoFinder output from all 47 species
MA_10431686g0010	No alias	homologous recombination repair exonuclease (EXO1)	0.09	OrthoFinder output from all 47 species
Msp_g36441	No alias	homologous recombination repair exonuclease *(EXO1) &...	0.02	OrthoFinder output from all 47 species
Ppi_g28691	No alias	homologous recombination repair exonuclease *(EXO1) &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014655	No alias	homologous recombination repair exonuclease *(EXO1) &...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019456	No alias	not classified & original description: CDS=751-2691	0.03	OrthoFinder output from all 47 species
Sam_g35172	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g071530.2.1	Solyc02g071530	homologous recombination repair exonuclease (EXO1)	0.08	OrthoFinder output from all 47 species
Solyc03g119070.2.1	Solyc03g119070	homologous recombination repair exonuclease (EXO1)	0.05	OrthoFinder output from all 47 species
Spa_g51609	No alias	homologous recombination repair exonuclease *(EXO1) &...	0.03	OrthoFinder output from all 47 species
Tin_g11001	No alias	homologous recombination repair exonuclease *(EXO1) &...	0.11	OrthoFinder output from all 47 species
Zm00001e019645_P001	Zm00001e019645	homologous recombination repair exonuclease (EXO1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006085	XPG_DNA_repair_N	1	100
IPR006086	XPG-I_dom	142	235

External Links

No external refs found!

AMTR_s00005p00265020 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation