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  5. AMTR_s00005p00203240

AMTR_s00005p00203240 (PTAC10, PDE312,...)


Aliases : PTAC10, PDE312, evm_27.TU.AmTr_v1.0_scaffold00005.80

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component


Gene families : OG0006411 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00005p00203240

Target Alias Description ECC score Gene Family Method Actions
AT3G48500 PTAC10, PDE312 Nucleic acid-binding, OB-fold-like protein 0.02 OrthoFinder output from all 47 species
Adi_g052271 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.1 OrthoFinder output from all 47 species
Aop_g07043 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
Azfi_s0353.g066638 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.05 OrthoFinder output from all 47 species
Cba_g04661 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
Ceric.02G035300.1 PTAC10, PDE312,... cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.04 OrthoFinder output from all 47 species
Lfl_g03268 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.04 OrthoFinder output from all 47 species
MA_10428299g0010 PTAC10, PDE312 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10435142g0010 PTAC10, PDE312 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_14025g0020 PTAC10, PDE312 PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Mp4g08250.1 PTAC10, PDE312 PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Msp_g00670 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.02 OrthoFinder output from all 47 species
Ppi_g15491 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016617 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
Smo438805 PTAC10, PDE312 RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 OrthoFinder output from all 47 species
Spa_g12662 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.02 OrthoFinder output from all 47 species
Tin_g09197 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.02 OrthoFinder output from all 47 species
Zm00001e028549_P001 PTAC10, PDE312,... PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004655 porphobilinogen synthase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!