AMTR_s00005p00173830 (SCN1,...)

Aliases : SCN1, evm_27.TU.AmTr_v1.0_scaffold00005.55

Description : Multi-process regulation.Rop GTPase regulatory system.RopGDI guanine nucleotide dissociation inhibitor

Gene families : OG0001513 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001513_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00005p00173830
Cluster	HCCA: Cluster_17

Target	Alias	Description	ECC score	Gene Family Method
AT1G12070	No alias	Immunoglobulin E-set superfamily protein	0.05	OrthoFinder output from all 47 species
AT1G62450	No alias	Immunoglobulin E-set superfamily protein	0.04	OrthoFinder output from all 47 species
AT3G07880	SCN1	Immunoglobulin E-set superfamily protein	0.03	OrthoFinder output from all 47 species
Als_g00528	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Cba_g15558	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.01	OrthoFinder output from all 47 species
Dac_g24741	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Dcu_g00737	No alias	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
GSVIVT01030419001	SCN1	Multi-process regulation.Rop GTPase regulatory...	0.05	OrthoFinder output from all 47 species
GSVIVT01031620001	SCN1	Multi-process regulation.Rop GTPase regulatory...	0.03	OrthoFinder output from all 47 species
LOC_Os01g68540.1	SCN1, LOC_Os01g68540	guanine nucleotide dissociation inhibitor (RopGDI)	0.03	OrthoFinder output from all 47 species
LOC_Os02g48730.1	SCN1, LOC_Os02g48730	guanine nucleotide dissociation inhibitor (RopGDI)	0.04	OrthoFinder output from all 47 species
Lfl_g37795	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Lfl_g38013	No alias	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.02	OrthoFinder output from all 47 species
MA_205752g0010	SCN1	guanine nucleotide dissociation inhibitor (RopGDI)	0.02	OrthoFinder output from all 47 species
Msp_g21563	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0155.g023612	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Sam_g08474	No alias	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Solyc05g054110.3.1	SCN1, Solyc05g054110	guanine nucleotide dissociation inhibitor (RopGDI)	0.05	OrthoFinder output from all 47 species
Solyc11g012270.2.1	SCN1, Solyc11g012270	guanine nucleotide dissociation inhibitor (RopGDI)	0.03	OrthoFinder output from all 47 species
Tin_g26735	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.03	OrthoFinder output from all 47 species
Tin_g28325	SCN1	guanine nucleotide dissociation inhibitor *(RopGDI) &...	0.02	OrthoFinder output from all 47 species
Zm00001e027138_P001	SCN1, Zm00001e027138	guanine nucleotide dissociation inhibitor (RopGDI)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005092	GDP-dissociation inhibitor activity	None	Extended
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030695	GTPase regulator activity	None	Extended
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140677	molecular function activator activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000406	Rho_GDI	67	254

External Links

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AMTR_s00005p00173830 (SCN1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation