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  5. AMTR_s00004p00270570

AMTR_s00004p00270570 (RGL2,...)


Aliases : RGL2, evm_27.TU.AmTr_v1.0_scaffold00004.296

Description : External stimuli response.biotic stress.symbiont-associated response.arbuscule branching.RAD1 GRAS-type transcription factor


Gene families : OG0001108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00270570
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT1G66350 RGL1, RGL RGA-like 1 0.03 OrthoFinder output from all 47 species
Adi_g102296 RGA2, GAI transcription factor *(DELLA) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19932 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.06 OrthoFinder output from all 47 species
Aob_g22059 SCR, SGR1 GRAS-type transcription factor *(RAD1) & original... 0.06 OrthoFinder output from all 47 species
Aob_g27908 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene01272.t1 RGA, RGA1,... transcription factor *(DELLA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32212.t1 RGL1, RGL,... GRAS-type transcription factor *(RAD1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene35127.t1 RGA2, GAI,... transcription factor *(DELLA) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene68508.t1 RGA2, GAI,... transcription factor *(DELLA) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0045.g029812 RGL2 GRAS-type transcription factor & original description: CDS=1-2046 0.04 OrthoFinder output from all 47 species
Azfi_s0068.g036465 RGA2, GAI GRAS-type transcription factor & original description: CDS=1-2091 0.02 OrthoFinder output from all 47 species
Dcu_g22196 RGA, RGA1 transcription factor *(DELLA) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g25487 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.07 OrthoFinder output from all 47 species
Dcu_g50393 RGL2 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007532001 RGA2, GAI RNA biosynthesis.transcriptional activation.GRAS... 0.05 OrthoFinder output from all 47 species
GSVIVT01011710001 RGA, RGA1 RNA biosynthesis.transcriptional activation.GRAS... 0.06 OrthoFinder output from all 47 species
Gb_32252 RGA, RGA1 DELLA-type gibberellin signal transducer. transcription... 0.03 OrthoFinder output from all 47 species
LOC_Os11g31100.1 RGL1, RGL, LOC_Os11g31100 DELLA-type gibberellin signal transducer. transcription... 0.09 OrthoFinder output from all 47 species
Len_g48752 RGL1, RGL GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g35839 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.03 OrthoFinder output from all 47 species
Msp_g37454 RGA2, GAI GRAS-type transcription factor *(RAD1) & original... 0.04 OrthoFinder output from all 47 species
Msp_g38765 SCR, SGR1 GRAS-type transcription factor *(RAD1) & original... 0.04 OrthoFinder output from all 47 species
Ore_g03910 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g26688 RGA, RGA1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27974 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.04 OrthoFinder output from all 47 species
Ore_g28807 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g29064 SCR, SGR1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29234 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.04 OrthoFinder output from all 47 species
Ore_g33996 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.04 OrthoFinder output from all 47 species
Ore_g37498 SCR, SGR1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017422 RGA2, GAI GRAS-type transcription factor & original description: CDS=1-1875 0.03 OrthoFinder output from all 47 species
Solyc10g086370.1.1 RGA, RGA1, Solyc10g086370 DELLA-type gibberellin signal transducer. transcription... 0.04 OrthoFinder output from all 47 species
Tin_g40110 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 154 524
No external refs found!