AMTR_s00004p00169140 (MBD11, ATMBD11,...)

Aliases : MBD11, ATMBD11, evm_27.TU.AmTr_v1.0_scaffold00004.189

Description : Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana

Gene families : OG0000919 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000919_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00004p00169140
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
Aev_g20078	MBD10	methylation reader *(MBD10-11) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g08851	MBD10	methylation reader *(MBD10-11) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g22478	MBD10	methylation reader *(MBD10-11) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.14G023800.1	MBD11, ATMBD11,...	methylation reader *(MBD10-11) & original description:...	0.03	OrthoFinder output from all 47 species
Ehy_g07494	MBD11, ATMBD11	methylation reader *(MBD10-11) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19997	MBD10	methylation reader *(MBD10-11) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g12685	MBD11, ATMBD11	methylation reader *(MBD10-11) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e004995_P005	MBD11, ATMBD11,...	methylation reader (MBD10-11)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001739	Methyl_CpG_DNA-bd	28	89

External Links

No external refs found!